D7LJD0 (D7LJD0_ARALL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Citrate synthase PIRNR PIRNR001369
EC=2.3.3.1 PIRNR PIRNR001369

Gene names

ORF Names:

ARALYDRAFT_483376 EMBL EFH58132.1

Organism

Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) [Complete proteome]

Taxonomic identifier

81972 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis › Arabidopsis lyrata

Protein attributes

Sequence length	509 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Acetyl-CoA + H2O + oxaloacetate = citrate + CoA. PIRNR PIRNR001369
Sequence similarities	Belongs to the citrate synthase family. RuleBase RU000441 PIRNR PIRNR001369

Ontologies

Keywords
Molecular function	Transferase RuleBase RU000441 PIRNR PIRNR001369
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cellular carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	citrate (Si)-synthase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	358	1	By similarity PIRSR PIRSR001369-1
	Active site	414	1	By similarity PIRSR PIRSR001369-1

Sequences

	Sequence		Length	Mass (Da)
	D7LJD0 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 161B6D00C1EB8DCB	FASTA	509	56,189
	10 20 30 40 50 60 MEISERVRAR LAVLSAHLAE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKKY 70 80 90 100 110 120 KVPVSDDGTV KAVDFKKIAT GKEDKGLKLY DPGYLNTAPV RSSISYIDGD EGILRYRGYP 130 140 150 160 170 180 IEEMAENSTF LEVAYLLMYG NLPSETQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG 190 200 210 220 230 240 VLVSAMSALS IFHPDANPAL RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV 250 260 270 280 290 300 LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG 310 320 330 340 350 360 VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV 370 380 390 400 410 420 YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS DDYFVKRKLY PNVDFYSGLI 430 440 450 460 470 480 YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI 490 500 VTDDSKESDK LGQVSTSNAS RRRLAGSSV

References

[1]

"The Arabidopsis lyrata genome sequence and the basis of rapid genome size change." Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K., Spannagl M., Wang X. , Yang L., Nasrallah M.E., Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L. Nat. Genet. 43:476-481(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. MN47.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL348716 Genomic DNA. Translation: EFH58132.1.
RefSeq	XP_002881873.1. XM_002881827.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9317939.
KEGG	aly:ARALYDRAFT_483376.
Phylogenomic databases
KO	K01647.
Family and domain databases
Gene3D	1.10.230.10. 1 hit. 1.10.580.10. 1 hit.
InterPro	IPR016142. Citrate_synth-like_lrg_a-sub. IPR016143. Citrate_synth-like_sm_a-sub. IPR002020. Citrate_synthase-like. IPR016141. Citrate_synthase-like_core. IPR019810. Citrate_synthase_AS. IPR024176. Citrate_synthase_bac-typ. [Graphical view]
PANTHER	PTHR11739. PTHR11739. 1 hit.
Pfam	PF00285. Citrate_synt. 1 hit. [Graphical view]
PIRSF	PIRSF001369. Citrate_synth. 1 hit.
PRINTS	PR00143. CITRTSNTHASE.
SUPFAM	SSF48256. Citrate_synthase_core. 1 hit.
PROSITE	PS00480. CITRATE_SYNTHASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D7LJD0_ARALL

Accession

Primary (citable) accession number: D7LJD0

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	March 6, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)