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D7KHZ2

- D7KHZ2_ARALL

UniProt

D7KHZ2 - D7KHZ2_ARALL

Protein

DNA ligase

Gene

ARALYDRAFT_888040

Organism
Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (10 Aug 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW
    4. double-strand break repair Source: EnsemblPlants/Gramene
    5. single strand break repair Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:ARALYDRAFT_888040Imported
    OrganismiArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)Imported
    Taxonomic identifieri81972 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000008694: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD7KHZ2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D7KHZ2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLAIRSSNYL RCLPSLCTKT QISQFSSVLL SFSRQVSHLR LSSCHRAMSS    50
    SRPSAFDALM SNARAAAKKK TPQTTTSSRS PNKRKIGETQ DANLGKTLVS 100
    EGTLPKTEDP VEPISDSAKP RSDTSSIAED SKTGTKKART LSKTDKIDEM 150
    KSKIGLLKKK PNDFDPEKVS CWEKGERVPF LFLALAFDLI SNESGRIVIT 200
    DILCNMLRTV IATTPEDLVA TVYLAANEIA PAHEGVELGI GEGTIIKAIS 250
    EAFGRTEDHV KKQNTELGDL GLVAKGSRST QTMMFKPEPL TVVKVFDTFR 300
    QIAKESGKDS NEKKKNRMKA LLVATTDCEP LYLTRLLQAK LRLGFSGQTV 350
    LAALGQAAVY NEEHSKPPPN TKSPLEEAAK IVKQVFTVLP VYDIIVPALL 400
    TGGVWNLPKT CNFTLGVPIG PMLAKPTKGV AEILNKFQDI VFTCEYKYDG 450
    ERAQIHFLED GTFEIYSRNA ERNTGKYPDV ALALSRLKKP SVKSFILDCE 500
    VVAFDREKKK ILPFQILSTR ARKNVNVNDI KVGVCIFAFD MLYLNGQQLI 550
    QENLNIRREK LYESFEEDPG YFQFATALTS SDIDEIQKFL DASVDVGCEG 600
    LIIKTLNSDA TYEPAKRSNN WLKLKKDYMD SIGDSMDLVP IAAFHGRGKR 650
    TGVYGAFLLA CYDVDKEEFQ SICKIGTGFS DAMLDERSSS LRSQVIATPK 700
    QYYRVGDSLN PDVWFEPTEV WEVKAADLTI SPVHRAATGI VDPDKGISLR 750
    FPRLLRVRED KKPEDATSSE QIADMYQAQK HNHPSNEVKG DDD 793
    Length:793
    Mass (Da):88,040
    Last modified:August 10, 2010 - v1
    Checksum:iACE39A227700F6BD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL348713 Genomic DNA. Translation: EFH68697.1.
    RefSeqiXP_002892438.1. XM_002892392.1.

    Genome annotation databases

    EnsemblPlantsiscaffold_100834.1; scaffold_100834.1; scaffold_100834.1.
    GeneIDi9328500.
    KEGGialy:ARALYDRAFT_888040.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL348713 Genomic DNA. Translation: EFH68697.1 .
    RefSeqi XP_002892438.1. XM_002892392.1.

    3D structure databases

    ProteinModelPortali D7KHZ2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi scaffold_100834.1 ; scaffold_100834.1 ; scaffold_100834.1 .
    GeneIDi 9328500.
    KEGGi aly:ARALYDRAFT_888040.

    Phylogenomic databases

    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. MN47Imported.

    Entry informationi

    Entry nameiD7KHZ2_ARALL
    AccessioniPrimary (citable) accession number: D7KHZ2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 10, 2010
    Last sequence update: August 10, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3