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Protein

DNA ligase

Gene

ARALYDRAFT_888040

Organism
Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:ARALYDRAFT_888040Imported
OrganismiArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)Imported
Taxonomic identifieri81972 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000008694 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD7KHZ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7KHZ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLAIRSSNYL RCLPSLCTKT QISQFSSVLL SFSRQVSHLR LSSCHRAMSS
60 70 80 90 100
SRPSAFDALM SNARAAAKKK TPQTTTSSRS PNKRKIGETQ DANLGKTLVS
110 120 130 140 150
EGTLPKTEDP VEPISDSAKP RSDTSSIAED SKTGTKKART LSKTDKIDEM
160 170 180 190 200
KSKIGLLKKK PNDFDPEKVS CWEKGERVPF LFLALAFDLI SNESGRIVIT
210 220 230 240 250
DILCNMLRTV IATTPEDLVA TVYLAANEIA PAHEGVELGI GEGTIIKAIS
260 270 280 290 300
EAFGRTEDHV KKQNTELGDL GLVAKGSRST QTMMFKPEPL TVVKVFDTFR
310 320 330 340 350
QIAKESGKDS NEKKKNRMKA LLVATTDCEP LYLTRLLQAK LRLGFSGQTV
360 370 380 390 400
LAALGQAAVY NEEHSKPPPN TKSPLEEAAK IVKQVFTVLP VYDIIVPALL
410 420 430 440 450
TGGVWNLPKT CNFTLGVPIG PMLAKPTKGV AEILNKFQDI VFTCEYKYDG
460 470 480 490 500
ERAQIHFLED GTFEIYSRNA ERNTGKYPDV ALALSRLKKP SVKSFILDCE
510 520 530 540 550
VVAFDREKKK ILPFQILSTR ARKNVNVNDI KVGVCIFAFD MLYLNGQQLI
560 570 580 590 600
QENLNIRREK LYESFEEDPG YFQFATALTS SDIDEIQKFL DASVDVGCEG
610 620 630 640 650
LIIKTLNSDA TYEPAKRSNN WLKLKKDYMD SIGDSMDLVP IAAFHGRGKR
660 670 680 690 700
TGVYGAFLLA CYDVDKEEFQ SICKIGTGFS DAMLDERSSS LRSQVIATPK
710 720 730 740 750
QYYRVGDSLN PDVWFEPTEV WEVKAADLTI SPVHRAATGI VDPDKGISLR
760 770 780 790
FPRLLRVRED KKPEDATSSE QIADMYQAQK HNHPSNEVKG DDD
Length:793
Mass (Da):88,040
Last modified:August 10, 2010 - v1
Checksum:iACE39A227700F6BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL348713 Genomic DNA. Translation: EFH68697.1.
RefSeqiXP_002892438.1. XM_002892392.1.

Genome annotation databases

EnsemblPlantsiscaffold_100834.1; scaffold_100834.1; scaffold_100834.1.
GeneIDi9328500.
KEGGialy:ARALYDRAFT_888040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL348713 Genomic DNA. Translation: EFH68697.1.
RefSeqiXP_002892438.1. XM_002892392.1.

3D structure databases

ProteinModelPortaliD7KHZ2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiscaffold_100834.1; scaffold_100834.1; scaffold_100834.1.
GeneIDi9328500.
KEGGialy:ARALYDRAFT_888040.

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. MN47Imported.

Entry informationi

Entry nameiD7KHZ2_ARALL
AccessioniPrimary (citable) accession number: D7KHZ2
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 27, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.