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D7FDM4 (D7FDM4_HELP3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Cag pathogenicity island protein Epsilon EMBL CBI66281.1
Gene names
Name:cag2 EMBL CBI66281.1
Ordered Locus Names:HPB8_724 EMBL CBI66281.1
OrganismHelicobacter pylori (strain B8) [Complete proteome] [HAMAP] EMBL CBI66281.1
Taxonomic identifier693745 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter ›

Protein attributes

Sequence length234 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA topological change

Inferred from electronic annotation. Source: InterPro

   Cellular_componentchromosome

Inferred from electronic annotation. Source: InterPro

   Molecular_functionDNA topoisomerase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D7FDM4 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: FAEE7B620DD7FA6D

FASTA23427,222
        10         20         30         40         50         60 
MVYYSLHDPH KRPINSFSLK TSNIIGFSIF YLRTRTKKII QKMASRHTDD SNKFNIKPKE 

        70         80         90        100        110        120 
KIDENVINAL ETSLKSKGVV SETLESIKEA KNNKEYENLS NRGFLRAKLD QGVGLNFQES 

       130        140        150        160        170        180 
IGYNLSALQK KAISLLKISP NQILELVQKL YMKGRISYPT EYLFEETFKK NLYKIYKDSE 

       190        200        210        220        230 
NDCFNKNVDD EEKVLLGFPN RKFTPNEFFT ATSLTLNARE FCLYINLKKK ETNV

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References

[1]"Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8."
Farnbacher M., Jahns T., Willrodt D., Daniel R., Haas R., Goesmann A., Kurtz S., Rieder G.
BMC Genomics 11:335-335(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B8 EMBL CBI66281.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN598874 Genomic DNA. Translation: CBI66281.1.
RefSeqYP_003728745.1. NC_014256.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBI66281; CBI66281; HPB8_724.
GeneID9349562.
KEGGhpl:HPB8_724.
PATRIC38175779. VBIHelPyl164240_0698.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000123424.
OMADSENDCF.

Enzyme and pathway databases

BioCycHPYL693745:GJAE-745-MONOMER.

Family and domain databases

Gene3D1.10.290.10. 1 hit.
InterProIPR013497. Topo_IA_cen.
IPR013826. Topo_IA_cen_sub3.
IPR023405. Topo_IA_core_domain.
[Graphical view]
PfamPF01131. Topoisom_bac. 1 hit.
[Graphical view]
SUPFAMSSF56712. Topo_IA_core. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD7FDM4_HELP3
AccessionPrimary (citable) accession number: D7FDM4
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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