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D7FDI5 (D7FDI5_HELP3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA polymerase III, beta chain EMBL CBI66242.1
EC=2.7.7.7 EMBL CBI66242.1
Gene names
Name:dnaN EMBL CBI66242.1
Ordered Locus Names:HPB8_685 EMBL CBI66242.1
OrganismHelicobacter pylori (strain B8) [Complete proteome] [HAMAP] EMBL CBI66242.1
Taxonomic identifier693745 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter ›

Protein attributes

Sequence length374 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA By similarity. SAAS SAAS022637

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS022637

Sequences

Sequence LengthMass (Da)Tools
D7FDI5 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: D4C40DBAAD7C9B65

FASTA37442,169
        10         20         30         40         50         60 
MKISVSKNDL ENALRYLQAF LDKKDASSIA SHIHLEVIKE KLFLKASDSD IGLKSYIFTQ 

        70         80         90        100        110        120 
SSDKEGVGTI NGKKFLDIIS CLKDSNIILE TKDDSLVIKQ NKSSFKLPMF DADEFPEFPV 

       130        140        150        160        170        180 
IEPKVSIEVN APFLVDAFKK IAPVIEQTSH KRELAGILMQ FDQKHQTLSV VGTDTKRLSY 

       190        200        210        220        230        240 
TQLEKISIHS TEEDISCILP KRALLEILKL FYENFSFKSD GMLAVIENET HTFFTKLIDG 

       250        260        270        280        290        300 
NYPDYQKILP KEYISSFTLG KEEFKESIKL CSSLSSTIKL TLEKNNALFE SLDSEHSETA 

       310        320        330        340        350        360 
KTSVEIEKGL DIEKAFHLGV NAKFFLEALN ALGTTQFVLK CNEPSSPFLI QESLDEKQSH 

       370 
LNAKISTLMM PITL

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References

[1]"Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8."
Farnbacher M., Jahns T., Willrodt D., Daniel R., Haas R., Goesmann A., Kurtz S., Rieder G.
BMC Genomics 11:335-335(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B8 EMBL CBI66242.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN598874 Genomic DNA. Translation: CBI66242.1.
RefSeqYP_003728706.1. NC_014256.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBI66242; CBI66242; HPB8_685.
GeneID9350113.
KEGGhpl:HPB8_685.
PATRIC38175711. VBIHelPyl164240_0664.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000100222.
KOK02338.
OMADYNRVIP.

Enzyme and pathway databases

BioCycHPYL693745:GJAE-706-MONOMER.

Family and domain databases

InterProIPR001001. DNA_polIII_beta.
IPR022635. DNA_polIII_beta_C.
IPR022637. DNA_polIII_beta_cen.
IPR022634. DNA_polIII_beta_N.
[Graphical view]
PfamPF00712. DNA_pol3_beta. 1 hit.
PF02767. DNA_pol3_beta_2. 1 hit.
PF02768. DNA_pol3_beta_3. 1 hit.
[Graphical view]
SMARTSM00480. POL3Bc. 1 hit.
[Graphical view]
TIGRFAMsTIGR00663. dnan. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD7FDI5_HELP3
AccessionPrimary (citable) accession number: D7FDI5
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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