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D7FDI5

- D7FDI5_HELP3

UniProt

D7FDI5 - D7FDI5_HELP3

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Protein

DNA polymerase III subunit beta

Gene

dnaN

Organism
Helicobacter pylori (strain B8)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

Catalytic activityi

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).SAAS annotation

GO - Molecular functioni

  1. 3'-5' exonuclease activity Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA-directed DNA polymerase activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

DNA-directed DNA polymeraseSAAS annotation, Nucleotidyltransferase, Transferase

Keywords - Biological processi

DNA replicationSAAS annotation

Enzyme and pathway databases

BioCyciHPYL693745:GJAE-706-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA polymerase III subunit betaSAAS annotation (EC:2.7.7.7SAAS annotation)
Gene namesi
Name:dnaNImported
Ordered Locus Names:HPB8_685Imported
OrganismiHelicobacter pylori (strain B8)Imported
Taxonomic identifieri693745 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000007091: Chromosome

Subcellular locationi

Cytoplasm SAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. DNA polymerase III complex Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000100222.
KOiK02338.
OMAiAVCSMPV.

Family and domain databases

InterProiIPR001001. DNA_polIII_beta.
IPR022635. DNA_polIII_beta_C.
IPR022637. DNA_polIII_beta_cen.
IPR022634. DNA_polIII_beta_N.
[Graphical view]
PfamiPF00712. DNA_pol3_beta. 1 hit.
PF02767. DNA_pol3_beta_2. 1 hit.
PF02768. DNA_pol3_beta_3. 1 hit.
[Graphical view]
SMARTiSM00480. POL3Bc. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00663. dnan. 1 hit.

Sequencei

Sequence statusi: Complete.

D7FDI5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKISVSKNDL ENALRYLQAF LDKKDASSIA SHIHLEVIKE KLFLKASDSD
60 70 80 90 100
IGLKSYIFTQ SSDKEGVGTI NGKKFLDIIS CLKDSNIILE TKDDSLVIKQ
110 120 130 140 150
NKSSFKLPMF DADEFPEFPV IEPKVSIEVN APFLVDAFKK IAPVIEQTSH
160 170 180 190 200
KRELAGILMQ FDQKHQTLSV VGTDTKRLSY TQLEKISIHS TEEDISCILP
210 220 230 240 250
KRALLEILKL FYENFSFKSD GMLAVIENET HTFFTKLIDG NYPDYQKILP
260 270 280 290 300
KEYISSFTLG KEEFKESIKL CSSLSSTIKL TLEKNNALFE SLDSEHSETA
310 320 330 340 350
KTSVEIEKGL DIEKAFHLGV NAKFFLEALN ALGTTQFVLK CNEPSSPFLI
360 370
QESLDEKQSH LNAKISTLMM PITL
Length:374
Mass (Da):42,169
Last modified:August 10, 2010 - v1
Checksum:iD4C40DBAAD7C9B65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN598874 Genomic DNA. Translation: CBI66242.1.
RefSeqiWP_000704197.1. NC_014256.1.
YP_003728706.1. NC_014256.1.

Genome annotation databases

EnsemblBacteriaiCBI66242; CBI66242; HPB8_685.
GeneIDi9350113.
KEGGihpl:HPB8_685.
PATRICi38175711. VBIHelPyl164240_0664.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN598874 Genomic DNA. Translation: CBI66242.1 .
RefSeqi WP_000704197.1. NC_014256.1.
YP_003728706.1. NC_014256.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBI66242 ; CBI66242 ; HPB8_685 .
GeneIDi 9350113.
KEGGi hpl:HPB8_685.
PATRICi 38175711. VBIHelPyl164240_0664.

Phylogenomic databases

HOGENOMi HOG000100222.
KOi K02338.
OMAi AVCSMPV.

Enzyme and pathway databases

BioCyci HPYL693745:GJAE-706-MONOMER.

Family and domain databases

InterProi IPR001001. DNA_polIII_beta.
IPR022635. DNA_polIII_beta_C.
IPR022637. DNA_polIII_beta_cen.
IPR022634. DNA_polIII_beta_N.
[Graphical view ]
Pfami PF00712. DNA_pol3_beta. 1 hit.
PF02767. DNA_pol3_beta_2. 1 hit.
PF02768. DNA_pol3_beta_3. 1 hit.
[Graphical view ]
SMARTi SM00480. POL3Bc. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00663. dnan. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8."
    Farnbacher M., Jahns T., Willrodt D., Daniel R., Haas R., Goesmann A., Kurtz S., Rieder G.
    BMC Genomics 11:335-335(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B8Imported.

Entry informationi

Entry nameiD7FDI5_HELP3
AccessioniPrimary (citable) accession number: D7FDI5
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: November 26, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3