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D7FDI5

- D7FDI5_HELP3

UniProt

D7FDI5 - D7FDI5_HELP3

Protein
Submitted name:

DNA polymerase III, beta chain

Gene

dnaN

Organism
Helicobacter pylori (strain B8)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (10 Aug 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).SAAS annotation

    GO - Molecular functioni

    1. 3'-5' exonuclease activity Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA-directed DNA polymerase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    DNA-directed DNA polymeraseSAAS annotation, Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    DNA replicationSAAS annotation

    Enzyme and pathway databases

    BioCyciHPYL693745:GJAE-706-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase III, beta chainImported (EC:2.7.7.7Imported)
    Gene namesi
    Name:dnaNImported
    Ordered Locus Names:HPB8_685Imported
    OrganismiHelicobacter pylori (strain B8)Imported
    Taxonomic identifieri693745 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
    ProteomesiUP000007091: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. DNA polymerase III complex Source: InterPro

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000100222.
    KOiK02338.
    OMAiAVCSMPV.

    Family and domain databases

    InterProiIPR001001. DNA_polIII_beta.
    IPR022635. DNA_polIII_beta_C.
    IPR022637. DNA_polIII_beta_cen.
    IPR022634. DNA_polIII_beta_N.
    [Graphical view]
    PfamiPF00712. DNA_pol3_beta. 1 hit.
    PF02767. DNA_pol3_beta_2. 1 hit.
    PF02768. DNA_pol3_beta_3. 1 hit.
    [Graphical view]
    SMARTiSM00480. POL3Bc. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00663. dnan. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D7FDI5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKISVSKNDL ENALRYLQAF LDKKDASSIA SHIHLEVIKE KLFLKASDSD    50
    IGLKSYIFTQ SSDKEGVGTI NGKKFLDIIS CLKDSNIILE TKDDSLVIKQ 100
    NKSSFKLPMF DADEFPEFPV IEPKVSIEVN APFLVDAFKK IAPVIEQTSH 150
    KRELAGILMQ FDQKHQTLSV VGTDTKRLSY TQLEKISIHS TEEDISCILP 200
    KRALLEILKL FYENFSFKSD GMLAVIENET HTFFTKLIDG NYPDYQKILP 250
    KEYISSFTLG KEEFKESIKL CSSLSSTIKL TLEKNNALFE SLDSEHSETA 300
    KTSVEIEKGL DIEKAFHLGV NAKFFLEALN ALGTTQFVLK CNEPSSPFLI 350
    QESLDEKQSH LNAKISTLMM PITL 374
    Length:374
    Mass (Da):42,169
    Last modified:August 10, 2010 - v1
    Checksum:iD4C40DBAAD7C9B65
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN598874 Genomic DNA. Translation: CBI66242.1.
    RefSeqiYP_003728706.1. NC_014256.1.

    Genome annotation databases

    EnsemblBacteriaiCBI66242; CBI66242; HPB8_685.
    GeneIDi9350113.
    KEGGihpl:HPB8_685.
    PATRICi38175711. VBIHelPyl164240_0664.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN598874 Genomic DNA. Translation: CBI66242.1 .
    RefSeqi YP_003728706.1. NC_014256.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBI66242 ; CBI66242 ; HPB8_685 .
    GeneIDi 9350113.
    KEGGi hpl:HPB8_685.
    PATRICi 38175711. VBIHelPyl164240_0664.

    Phylogenomic databases

    HOGENOMi HOG000100222.
    KOi K02338.
    OMAi AVCSMPV.

    Enzyme and pathway databases

    BioCyci HPYL693745:GJAE-706-MONOMER.

    Family and domain databases

    InterProi IPR001001. DNA_polIII_beta.
    IPR022635. DNA_polIII_beta_C.
    IPR022637. DNA_polIII_beta_cen.
    IPR022634. DNA_polIII_beta_N.
    [Graphical view ]
    Pfami PF00712. DNA_pol3_beta. 1 hit.
    PF02767. DNA_pol3_beta_2. 1 hit.
    PF02768. DNA_pol3_beta_3. 1 hit.
    [Graphical view ]
    SMARTi SM00480. POL3Bc. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00663. dnan. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8."
      Farnbacher M., Jahns T., Willrodt D., Daniel R., Haas R., Goesmann A., Kurtz S., Rieder G.
      BMC Genomics 11:335-335(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B8Imported.

    Entry informationi

    Entry nameiD7FDI5_HELP3
    AccessioniPrimary (citable) accession number: D7FDI5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 10, 2010
    Last sequence update: August 10, 2010
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3