Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L23

Gene

rplW

Organism
Nostoc azollae (strain 0708) (Anabaena azollae (strain 0708))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciTAZO551115:GH0O-2576-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Synonyms:rpl23UniRule annotation
Ordered Locus Names:Aazo_2561Imported
OrganismiNostoc azollae (strain 0708) (Anabaena azollae (strain 0708))Imported
Taxonomic identifieri551115 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeTrichormus
ProteomesiUP000001511 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi551115.Aazo_2561.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000231366.
KOiK02892.
OMAiISINTCL.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

D7DYX5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPNFDPRNLA DLVHRPILTE KATILMEQNK YTFEVTPKSS KPEIKAAIED
60 70 80 90 100
LFQVKVVKIN TALPPRKQRR VGKFIGYKPQ YKRAIVTVAP GDEDKIRKLL

FPDV
Length:104
Mass (Da):11,960
Last modified:August 10, 2010 - v1
Checksum:i9BBABA6A6DCAB6D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002059 Genomic DNA. Translation: ADI64454.1.
RefSeqiWP_013191471.1. NC_014248.1.
YP_003721577.1. NC_014248.1.

Genome annotation databases

EnsemblBacteriaiADI64454; ADI64454; Aazo_2561.
KEGGinaz:Aazo_2561.
PATRICi38228189. VBINosAzo102301_3405.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002059 Genomic DNA. Translation: ADI64454.1.
RefSeqiWP_013191471.1. NC_014248.1.
YP_003721577.1. NC_014248.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi551115.Aazo_2561.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADI64454; ADI64454; Aazo_2561.
KEGGinaz:Aazo_2561.
PATRICi38228189. VBINosAzo102301_3405.

Phylogenomic databases

HOGENOMiHOG000231366.
KOiK02892.
OMAiISINTCL.

Enzyme and pathway databases

BioCyciTAZO551115:GH0O-2576-MONOMER.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium."
    Ran L., Larsson J., Vigil-Stenman T., Nylander J.A., Ininbergs K., Zheng W.W., Lapidus A., Lowry S., Haselkorn R., Bergman B.
    PLoS ONE 5:E11486-E11486(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 0708Imported.

Entry informationi

Entry nameiD7DYX5_NOSA0
AccessioniPrimary (citable) accession number: D7DYX5
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: June 24, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.