Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D7DYX5 (D7DYX5_NOSA0) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L23 HAMAP-Rule MF_01369
Gene names
Name:rplW HAMAP-Rule MF_01369
Synonyms:rpl23 HAMAP-Rule MF_01369
Ordered Locus Names:Aazo_2561 EMBL ADI64454.1
OrganismNostoc azollae (strain 0708) (Anabaena azollae (strain 0708)) [Complete proteome] [HAMAP] EMBL ADI64454.1
Taxonomic identifier551115 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaNostocalesNostocaceaeTrichormus

Protein attributes

Sequence length104 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP-Rule MF_01369

Sequence similarities

Belongs to the ribosomal protein L23P family. HAMAP-Rule MF_01369

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D7DYX5 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: 9BBABA6A6DCAB6D5

FASTA10411,960
        10         20         30         40         50         60 
MPNFDPRNLA DLVHRPILTE KATILMEQNK YTFEVTPKSS KPEIKAAIED LFQVKVVKIN 

        70         80         90        100 
TALPPRKQRR VGKFIGYKPQ YKRAIVTVAP GDEDKIRKLL FPDV 

« Hide

References

[1]"Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium."
Ran L., Larsson J., Vigil-Stenman T., Nylander J.A., Ininbergs K., Zheng W.W., Lapidus A., Lowry S., Haselkorn R., Bergman B.
PLoS ONE 5:E11486-E11486(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 0708 EMBL ADI64454.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002059 Genomic DNA. Translation: ADI64454.1.
RefSeqYP_003721577.1. NC_014248.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADI64454; ADI64454; Aazo_2561.
GeneID9340360.
KEGGnaz:Aazo_2561.
PATRIC38228189. VBINosAzo102301_3405.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000231366.
KOK02892.
OMAMEQNKYT.

Enzyme and pathway databases

BioCycTAZO551115:GH0O-2576-MONOMER.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_B. Ribosomal_L23_B.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. SSF54189. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD7DYX5_NOSA0
AccessionPrimary (citable) accession number: D7DYX5
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 14, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)