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D7DYX5

- D7DYX5_NOSA0

UniProt

D7DYX5 - D7DYX5_NOSA0

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Protein

50S ribosomal protein L23

Gene
rplW, rpl23, Aazo_2561
Organism
Nostoc azollae (strain 0708) (Anabaena azollae (strain 0708))
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciTAZO551115:GH0O-2576-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Synonyms:rpl23UniRule annotation
Ordered Locus Names:Aazo_2561Imported
OrganismiNostoc azollae (strain 0708) (Anabaena azollae (strain 0708))Imported
Taxonomic identifieri551115 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeTrichormus
ProteomesiUP000001511: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000231366.
KOiK02892.
OMAiMEQNKYT.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

D7DYX5-1 [UniParc]FASTAAdd to Basket

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MPNFDPRNLA DLVHRPILTE KATILMEQNK YTFEVTPKSS KPEIKAAIED    50
LFQVKVVKIN TALPPRKQRR VGKFIGYKPQ YKRAIVTVAP GDEDKIRKLL 100
FPDV 104
Length:104
Mass (Da):11,960
Last modified:August 10, 2010 - v1
Checksum:i9BBABA6A6DCAB6D5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002059 Genomic DNA. Translation: ADI64454.1.
RefSeqiYP_003721577.1. NC_014248.1.

Genome annotation databases

EnsemblBacteriaiADI64454; ADI64454; Aazo_2561.
GeneIDi9340360.
KEGGinaz:Aazo_2561.
PATRICi38228189. VBINosAzo102301_3405.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002059 Genomic DNA. Translation: ADI64454.1 .
RefSeqi YP_003721577.1. NC_014248.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADI64454 ; ADI64454 ; Aazo_2561 .
GeneIDi 9340360.
KEGGi naz:Aazo_2561.
PATRICi 38228189. VBINosAzo102301_3405.

Phylogenomic databases

HOGENOMi HOG000231366.
KOi K02892.
OMAi MEQNKYT.

Enzyme and pathway databases

BioCyci TAZO551115:GH0O-2576-MONOMER.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium."
    Ran L., Larsson J., Vigil-Stenman T., Nylander J.A., Ininbergs K., Zheng W.W., Lapidus A., Lowry S., Haselkorn R., Bergman B.
    PLoS ONE 5:E11486-E11486(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 0708Imported.

Entry informationi

Entry nameiD7DYX5_NOSA0
AccessioniPrimary (citable) accession number: D7DYX5
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 14, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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