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Protein
Submitted name:

ATP dependent DNA ligase

Gene

M301_2402

Organism
Methylotenera versatilis (strain 301)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMVER666681:GHRP-2453-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:M301_2402Imported
OrganismiMethylotenera versatilis (strain 301)Imported
Taxonomic identifieri666681 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylotenera
ProteomesiUP000000383 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828 PotentialImportedAdd
BLAST
Chaini29 – 286258 PotentialImportedPRO_5000608832Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi666681.M301_2402.

Structurei

3D structure databases

ProteinModelPortaliD7DMI7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D7DMI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSIRHLFFV AIASAAFSVL FATQINAKQN DSNVLLAKVY QPGTHVQQYL
60 70 80 90 100
VSEKFDGVRA VWDGSIFHTR TDHVIAAPAW FTKGLPKTPL DGELWLGHGK
110 120 130 140 150
FEALSGAVRK DIPIDEEWRG ISYMVFELPN ATGSFAERAK RIVSIVKQAN
160 170 180 190 200
IPHLKAVKQF KVSDEVALHK LLKQIVAQGG EGLMLHRADA PYVTGRSDVL
210 220 230 240 250
LKLKLLYDAE ATVVAHTAGQ GKYKGKLGAL EVETPEGIRF KLGTGFTDAQ
260 270 280
RENPPIIGST VTYTYRDKTK AGKPKFASFL RVRNEQ
Length:286
Mass (Da):31,630
Last modified:August 10, 2010 - v1
Checksum:i33696F1CBA0B7DB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002056 Genomic DNA. Translation: ADI30764.1.
RefSeqiWP_013149072.1. NC_014207.1.
YP_003675341.1. NC_014207.1.

Genome annotation databases

EnsemblBacteriaiADI30764; ADI30764; M301_2402.
KEGGimeh:M301_2402.
PATRICi38201199. VBIMetSp140979_2415.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002056 Genomic DNA. Translation: ADI30764.1.
RefSeqiWP_013149072.1. NC_014207.1.
YP_003675341.1. NC_014207.1.

3D structure databases

ProteinModelPortaliD7DMI7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi666681.M301_2402.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADI30764; ADI30764; M301_2402.
KEGGimeh:M301_2402.
PATRICi38201199. VBIMetSp140979_2415.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciMVER666681:GHRP-2453-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Methylotenera sp. 301."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Clum A., Land M., Hauser L., Kyrpides N., Ivanova N., Chistoservova L., Kalyuzhnaya M., Woyke T.
    Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 301Imported.

Entry informationi

Entry nameiD7DMI7_METV0
AccessioniPrimary (citable) accession number: D7DMI7
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: June 24, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.