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Protein
Submitted name:

Alpha amylase catalytic region

Gene

GC56T3_2854

Organism
Geobacillus sp. (strain C56-T3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciGSP691437:GI2V-2946-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:GC56T3_2854Imported
OrganismiGeobacillus sp. (strain C56-T3)Imported
Taxonomic identifieri691437 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
ProteomesiUP000000380: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424 PotentialImportedAdd
BLAST
Chaini25 – 511487 PotentialImportedPRO_5000608397Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliD7D2F9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000085496.
KOiK01176.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D7D2F9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGNRLFMLLV LPFLLFYAWP VQAAEKEERT WQDEAIYFIM VDRFNNMDPT
60 70 80 90 100
NDKGVNVNDP KGYFGGDLKG VTAKLDYIKE MGFTAIWLTP IFENMPGGYH
110 120 130 140 150
GYWIKDFYRV DPHFGTLDDL KTLVKEAHKR HMKVILDFVA NHVGYNHPWL
160 170 180 190 200
HDPTKKDWFH PKKEIFDWND QTQLENGWVY GLPDLAQENP EVKKYLIDAA
210 220 230 240 250
KWWIKETDID GYRLDTVRHV PKSFWQEFAK EVKSVKKDFF LLGEVWSDDP
260 270 280 290 300
CYIAEYGKYG IDGFVDYPLY GAVKQSLARR DASLRPLYDV WEYNKTFYDR
310 320 330 340 350
PYLLGSFLDN HDTVRFTKLS IDNHNNPISR IKLAMTYLFT APGIPIMYYG
360 370 380 390 400
TEIAMNGGED PDNRRLMDFR ADPEIIDYLK KIGPLRQQLS SLRRGDFTLL
410 420 430 440 450
YEKDGMAVWK RQYEDETTVI AINNTGETQH VHLTNDQLPK NKELRGFLLD
460 470 480 490 500
DLVRGDGDGY DLVLDRETAE VYKLREKTGI NVPFIAAIVS VYVLFLLFLY
510
LVKKRAKRMP E
Length:511
Mass (Da):59,859
Last modified:August 10, 2010 - v1
Checksum:i4DAF28AEB7043BAB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002050 Genomic DNA. Translation: ADI27796.1.
RefSeqiWP_013146184.1. NC_014206.1.
YP_003672373.1. NC_014206.1.

Genome annotation databases

EnsemblBacteriaiADI27796; ADI27796; GC56T3_2854.
GeneIDi9237952.
KEGGigct:GC56T3_2854.
PATRICi38172932. VBIGeoSp154431_3101.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002050 Genomic DNA. Translation: ADI27796.1.
RefSeqiWP_013146184.1. NC_014206.1.
YP_003672373.1. NC_014206.1.

3D structure databases

ProteinModelPortaliD7D2F9.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADI27796; ADI27796; GC56T3_2854.
GeneIDi9237952.
KEGGigct:GC56T3_2854.
PATRICi38172932. VBIGeoSp154431_3101.

Phylogenomic databases

HOGENOMiHOG000085496.
KOiK01176.

Enzyme and pathway databases

BioCyciGSP691437:GI2V-2946-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Geobacillus sp. C56-T3."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Kourtz L., Brumm P., Mead D., Woyke T.
    Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C56-T3Imported.

Entry informationi

Entry nameiD7D2F9_GEOSC
AccessioniPrimary (citable) accession number: D7D2F9
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: January 7, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.