D7CNI7 (D7CNI7_SYNLT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADI02272.1

Gene names

Ordered Locus Names:

Slip_1509 EMBL ADI02272.1

Organism

Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) [Complete proteome] [HAMAP] EMBL ADI02272.1

Taxonomic identifier

643648 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Syntrophomonadaceae › Syntrophothermus › Syntrophothermus lipocalidus

Protein attributes

Sequence length	312 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADI02272.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D7CNI7 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 3908B533729C26F2	FASTA	312	35,298
	10 20 30 40 50 60 MVMPVIKPGT PFIPMEPVFH PEAFDDENYG FQIKWDGTRI IAHLDGPVEL FNRKMKKRTA 70 80 90 100 110 120 QYPEVADALK EALRGTSAVL DGEIVTLSGD KPNFHQLMRR DRATDARTIN HLATRIPVTY 130 140 150 160 170 180 VVFDILYLKD KCLADLPFWQ RDGILRSTLK SSDPVVVTDT FKGRGKALFA IVREKGLEGI 190 200 210 220 230 240 VAKRLESTYQ IGKKSAKWLK IKNRQRTTAL VGGFVAEGKQ VRSLFLGQLV EGDLIYIGRA 250 260 270 280 290 300 SSGLDEETGR ALYDFLSRRA ENTCPFVNPP AVERRENLVW VLPSASVEVE FYDYTEKGYL 310 RHPVIKRVEL GL

References

[1]

"Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)." US DOE Joint Genome Institute (JGI-PGF) Djao O., Zhang X., Lucas S., Lapidus A., Glavina Del Rio T., Nolan M., Tice H., Cheng J., Han C., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Ovchinnikova G., Pati A. , Brambilla E., Chen A., Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Rohde M., Sikorski J., Spring S., Goker M., Detter J., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H. Stand. Genomic Sci. 3:267-275(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 12680 / TGB-C1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002048 Genomic DNA. Translation: ADI02272.1.
RefSeq	YP_003702837.1. NC_014220.1.
3D structure databases
ProteinModelPortal	D7CNI7.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADI02272; ADI02272; Slip_1509.
GeneID	9274301.
KEGG	slp:Slip_1509.
PATRIC	38269498. VBISynLip21176_1566.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
OMA	AVHIEPT.
Enzyme and pathway databases
BioCyc	SLIP643648:GHUR-1534-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D7CNI7_SYNLT

Accession

Primary (citable) accession number: D7CNI7

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)