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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Slip_1509

Organism
Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSLIP643648:GHUR-1534-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Slip_1509Imported
OrganismiSyntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)Imported
Taxonomic identifieri643648 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesSyntrophomonadaceaeSyntrophothermus
ProteomesiUP000000378: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD7CNI7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7CNI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVMPVIKPGT PFIPMEPVFH PEAFDDENYG FQIKWDGTRI IAHLDGPVEL
60 70 80 90 100
FNRKMKKRTA QYPEVADALK EALRGTSAVL DGEIVTLSGD KPNFHQLMRR
110 120 130 140 150
DRATDARTIN HLATRIPVTY VVFDILYLKD KCLADLPFWQ RDGILRSTLK
160 170 180 190 200
SSDPVVVTDT FKGRGKALFA IVREKGLEGI VAKRLESTYQ IGKKSAKWLK
210 220 230 240 250
IKNRQRTTAL VGGFVAEGKQ VRSLFLGQLV EGDLIYIGRA SSGLDEETGR
260 270 280 290 300
ALYDFLSRRA ENTCPFVNPP AVERRENLVW VLPSASVEVE FYDYTEKGYL
310
RHPVIKRVEL GL
Length:312
Mass (Da):35,298
Last modified:August 10, 2010 - v1
Checksum:i3908B533729C26F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002048 Genomic DNA. Translation: ADI02272.1.
RefSeqiWP_013175674.1. NC_014220.1.
YP_003702837.1. NC_014220.1.

Genome annotation databases

EnsemblBacteriaiADI02272; ADI02272; Slip_1509.
GeneIDi9274301.
KEGGislp:Slip_1509.
PATRICi38269498. VBISynLip21176_1566.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002048 Genomic DNA. Translation: ADI02272.1.
RefSeqiWP_013175674.1. NC_014220.1.
YP_003702837.1. NC_014220.1.

3D structure databases

ProteinModelPortaliD7CNI7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADI02272; ADI02272; Slip_1509.
GeneIDi9274301.
KEGGislp:Slip_1509.
PATRICi38269498. VBISynLip21176_1566.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.

Enzyme and pathway databases

BioCyciSLIP643648:GHUR-1534-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 12680 / TGB-C1Imported.

Entry informationi

Entry nameiD7CNI7_SYNLT
AccessioniPrimary (citable) accession number: D7CNI7
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: February 4, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.