Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D7CNI7

- D7CNI7_SYNLT

UniProt

D7CNI7 - D7CNI7_SYNLT

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Slip_1509

Organism
Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (10 Aug 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSLIP643648:GHUR-1534-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Slip_1509Imported
    OrganismiSyntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)Imported
    Taxonomic identifieri643648 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesSyntrophomonadaceaeSyntrophothermus
    ProteomesiUP000000378: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD7CNI7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiVEVKYGQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D7CNI7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVMPVIKPGT PFIPMEPVFH PEAFDDENYG FQIKWDGTRI IAHLDGPVEL    50
    FNRKMKKRTA QYPEVADALK EALRGTSAVL DGEIVTLSGD KPNFHQLMRR 100
    DRATDARTIN HLATRIPVTY VVFDILYLKD KCLADLPFWQ RDGILRSTLK 150
    SSDPVVVTDT FKGRGKALFA IVREKGLEGI VAKRLESTYQ IGKKSAKWLK 200
    IKNRQRTTAL VGGFVAEGKQ VRSLFLGQLV EGDLIYIGRA SSGLDEETGR 250
    ALYDFLSRRA ENTCPFVNPP AVERRENLVW VLPSASVEVE FYDYTEKGYL 300
    RHPVIKRVEL GL 312
    Length:312
    Mass (Da):35,298
    Last modified:August 10, 2010 - v1
    Checksum:i3908B533729C26F2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002048 Genomic DNA. Translation: ADI02272.1.
    RefSeqiWP_013175674.1. NC_014220.1.
    YP_003702837.1. NC_014220.1.

    Genome annotation databases

    EnsemblBacteriaiADI02272; ADI02272; Slip_1509.
    GeneIDi9274301.
    KEGGislp:Slip_1509.
    PATRICi38269498. VBISynLip21176_1566.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002048 Genomic DNA. Translation: ADI02272.1 .
    RefSeqi WP_013175674.1. NC_014220.1.
    YP_003702837.1. NC_014220.1.

    3D structure databases

    ProteinModelPortali D7CNI7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADI02272 ; ADI02272 ; Slip_1509 .
    GeneIDi 9274301.
    KEGGi slp:Slip_1509.
    PATRICi 38269498. VBISynLip21176_1566.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi VEVKYGQ.

    Enzyme and pathway databases

    BioCyci SLIP643648:GHUR-1534-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 12680 / TGB-C1Imported.

    Entry informationi

    Entry nameiD7CNI7_SYNLT
    AccessioniPrimary (citable) accession number: D7CNI7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 10, 2010
    Last sequence update: August 10, 2010
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3