D7CKS3 (D7CKS3_SYNLT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Serine-type D-Ala-D-Ala carboxypeptidase EMBL ADI01308.1
EC=3.4.16.4 EMBL ADI01308.1

Gene names

Ordered Locus Names:

Slip_0524

Organism

Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) [Complete proteome] [HAMAP] EMBL ADI01308.1

Taxonomic identifier

643648 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Syntrophomonadaceae › Syntrophothermus › Syntrophothermus lipocalidus

Protein attributes

Sequence length	381 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the peptidase S11 family. RuleBase RU004016

Ontologies

Keywords
Domain	Signal EMBL ADI01308.1
Molecular function	Carboxypeptidase EMBL ADI01308.1 Hydrolase Protease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	proteolysis Inferred from electronic annotation. Source: InterPro
Molecular_function	serine-type D-Ala-D-Ala carboxypeptidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 27	27	Potential EMBL ADI01308.1
	Chain	28 – 381	354	Potential EMBL ADI01308.1		PRO_5000606993

Sequences

	Sequence		Length	Mass (Da)
	D7CKS3 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 5A5BEAB268A1769F	FASTA	381	42,881
	10 20 30 40 50 60 MKTRKRLLWL MAWVLFFSLA FPTTAWGAVV DVEADSYVLM DADSGKVLLA KNEHKRLPPA 70 80 90 100 110 120 SMTKLMTLIL AMEDLYKGKV DLKEKVVASE NAWKLGGSQI YLEPGEEMTF EDMVIAIAVG 130 140 150 160 170 180 SANDACVAVA EHLDGSHEEF VKRMNAKAKE LRLKDTHFVN AYGLPDPDHY SSAYDLALMA 190 200 210 220 230 240 RYALCYPKLL EFTSIKEYNL RQGEFKLYNT NKLLWHYPGT DGFKTGWTNE AKFCLVSTAK 250 260 270 280 290 300 RNGLRLICVV MASPQKGGNF RDSMKLFNYG FAKYAYRSFF APQSQCGLVS VGKGTNDRVE 310 320 330 340 350 360 AICTQEVGAS CLKGEEKNIT YKRSLVDYID APVKKGQKLG EIKVYNSGRL VKTVDLVAYR 370 380 DVERCGIWKE ITKAMSKIFC L

References

[1]

"Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)." US DOE Joint Genome Institute (JGI-PGF) Djao O., Zhang X., Lucas S., Lapidus A., Glavina Del Rio T., Nolan M., Tice H., Cheng J., Han C., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Ovchinnikova G., Pati A. , Brambilla E., Chen A., Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Rohde M., Sikorski J., Spring S., Goker M., Detter J., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H. Stand. Genomic Sci. 3:267-275(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 12680 / TGB-C1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002048 Genomic DNA. Translation: ADI01308.1.
RefSeq	YP_003701873.1. NC_014220.1.
3D structure databases
ProteinModelPortal	D7CKS3.
ModBase	Search...
Protein family/group databases
MEROPS	S11.005.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADI01308; ADI01308; Slip_0524.
GeneID	9273304.
KEGG	slp:Slip_0524.
PATRIC	38267434. VBISynLip21176_0545.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000086625.
KO	K07258.
OMA	TEMAHEL.
Enzyme and pathway databases
BioCyc	SLIP643648:GHUR-537-MONOMER.
Family and domain databases
Gene3D	2.60.410.10. 1 hit. 3.40.710.10. 1 hit.
InterPro	IPR012338. Beta-lactam/transpept-like. IPR015956. Peniciliin-bd_prot-assoc. IPR018044. Peptidase_S11. IPR012907. Peptidase_S11_C. IPR001967. Peptidase_S11_N. [Graphical view]
Pfam	PF07943. PBP5_C. 1 hit. PF00768. Peptidase_S11. 1 hit. [Graphical view]
PRINTS	PR00725. DADACBPTASE1.
SMART	SM00936. PBP5_C. 1 hit. [Graphical view]
SUPFAM	SSF56601. PBP_transp_fold. 1 hit. SSF69189. Peniciliin-bd_prot-assoc. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D7CKS3_SYNLT

Accession

Primary (citable) accession number: D7CKS3

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)