D7CK69 (D7CK69_SYNLT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADI03053.1
EC=5.1.1.1 EMBL ADI03053.1

Gene names

Ordered Locus Names:

Slip_2314

Organism

Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) [Complete proteome] [HAMAP] EMBL ADI03053.1

Taxonomic identifier

643648 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Syntrophomonadaceae › Syntrophothermus › Syntrophothermus lipocalidus

Protein attributes

Sequence length	400 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608 EMBL ADI03053.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D7CK69 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 9E4309FA4B90F43A	FASTA	400	44,295
	10 20 30 40 50 60 MQLMPNNRWI EVDIDALVHN LEAVRSLLKE NTRLIAVLKA NAYGLGAVGT ARVLARHGVD 70 80 90 100 110 120 YFAVTFPEEA FELREGGIST DILVFAPAGE REIEKAVEQG LTLTVASYRD YRLASEAASR 130 140 150 160 170 180 FNKKVRIHLK IDTGLGRFGV TADRALELAR LIHYDQWLVL EGLYTHFAEA GARSPKFTQS 190 200 210 220 230 240 QFEQLQKTVD ALTSNGIRPA LIHCCNSAAA LRFPEMHLDA VRIGTLLGGQ HPAGHVPNKI 250 260 270 280 290 300 KLKNPYRFKA RVTAVREMPA GSYLGYYRTY RTRAASKIAV VPVGFADGLG LEALSRPGSW 310 320 330 340 350 360 FDLFKIIAKL VGSYLNLSRF TVKVKIGKDE YPVRGKVFMQ FCLVELPPDF PVEPGTVVEV 370 380 390 400 PVKRTLAPSD IRRAYIENGC LVEAEGDDEG VLGAKREVVE

References

[1]

"Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)." US DOE Joint Genome Institute (JGI-PGF) Djao O., Zhang X., Lucas S., Lapidus A., Glavina Del Rio T., Nolan M., Tice H., Cheng J., Han C., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Ovchinnikova G., Pati A. , Brambilla E., Chen A., Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Rohde M., Sikorski J., Spring S., Goker M., Detter J., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H. Stand. Genomic Sci. 3:267-275(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 12680 / TGB-C1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002048 Genomic DNA. Translation: ADI03053.1.
RefSeq	YP_003703618.1. NC_014220.1.
3D structure databases
ProteinModelPortal	D7CK69.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADI03053; ADI03053; Slip_2314.
GeneID	9275133.
KEGG	slp:Slip_2314.
PATRIC	38271172. VBISynLip21176_2377.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	DAWIDIN.
Enzyme and pathway databases
BioCyc	SLIP643648:GHUR-2366-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D7CK69_SYNLT

Accession

Primary (citable) accession number: D7CK69

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)