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Protein
Submitted name:

Pectate disaccharide-lyase

Gene

Ndas_1008

Organism
Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / CIP 107115 / JCM 7437 / KCTC 9190 / NBRC 14626 / NCTC 10488 / NRRL B-5397 / IMRU 509) (Actinomadura dassonvillei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionLyaseImported

Enzyme and pathway databases

BioCyciNDAS446468:GHUM-1019-MONOMER.

Protein family/group databases

CAZyiCBM35. Carbohydrate-Binding Module Family 35.
PL9. Polysaccharide Lyase Family 9.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate disaccharide-lyaseImported (EC:4.2.2.9Imported)
Gene namesi
Ordered Locus Names:Ndas_1008Imported
OrganismiNocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / CIP 107115 / JCM 7437 / KCTC 9190 / NBRC 14626 / NCTC 10488 / NRRL B-5397 / IMRU 509) (Actinomadura dassonvillei)Imported
Taxonomic identifieri446468 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptosporangialesNocardiopsaceaeNocardiopsis
Proteomesi
  • UP000002219 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_500309264328 – 540Sequence analysisAdd BLAST513

Interactioni

Protein-protein interaction databases

STRINGi446468.Ndas_1008.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 154CBM6InterPro annotationAdd BLAST125

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4106WHP. Bacteria.
ENOG410XUYX. LUCA.
HOGENOMiHOG000217148.
OMAiNASYWHV.
OrthoDBiPOG091H0FJA.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
2.60.120.260. 1 hit.
InterProiView protein in InterPro
IPR006584. Cellulose-bd_IV.
IPR005084. CMB_fam6.
IPR008979. Galactose-bd-like_sf.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
PfamiView protein in Pfam
PF16990. CBM_35. 1 hit.
SMARTiView protein in SMART
SM00606. CBD_IV. 1 hit.
SM00710. PbH1. 4 hits.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF51126. SSF51126. 1 hit.
PROSITEiView protein in PROSITE
PS51175. CBM6. 1 hit.

Sequencei

Sequence statusi: Complete.

D7B160-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTRPALACA ALLAGTLVTL SGTAAHAATT RYEAEGTSAS CNGSIETEWP
60 70 80 90 100
GYSGDGFCDT ENEEGAHVQF SVNAPASGTA TLTVRFANGT SSARPADVLV
110 120 130 140 150
NGSRTASVSF EGTGDWDAWT TKTLTVQLAE GANTIRFDPT GSQGMPNVDY
160 170 180 190 200
LDVETSGGGD DGGGDDGGGD DGGGDDGNPP TSDALYVAPG GSAGADGTES
210 220 230 240 250
DPTTLTSAID RIEPGGTIHM RGGTYSFSDT VTIPLGEDGT SGNRTELSAY
260 270 280 290 300
PGETPVLDFS AQSEDSANRG LALEASYWHV EGIVVEHAGD NGIFVSGSHN
310 320 330 340 350
VIERTVTRFN RDTGLQLSRR VSSTPESDWP AHNLILSAES HDNADSDGED
360 370 380 390 400
ADGFAAKLTS GPGNVFRYAV AHNNIDDGWD LYTKDDTGPI GTVTIEDSLA
410 420 430 440 450
YENGILSDGS QAGNGDRNGF KLGGEDIGVD HVITGNIAYD NGKHGFTYNS
460 470 480 490 500
NPGSMTVSDN VSIGNEERNF NFDDGSSVFR GNTSCDSGSN DRIIGNADSS
510 520 530 540
NQFWSGSNGS RCSSYDGGLD WSYAADGTLV VTFGGQRVTP
Length:540
Mass (Da):55,897
Last modified:August 10, 2010 - v1
Checksum:i9ED252B29DE3F318
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002040 Genomic DNA. Translation: ADH66451.1.
RefSeqiWP_013152058.1. NC_014210.1.

Genome annotation databases

EnsemblBacteriaiADH66451; ADH66451; Ndas_1008.
KEGGinda:Ndas_1008.

Similar proteinsi

Entry informationi

Entry nameiD7B160_NOCDD
AccessioniPrimary (citable) accession number: D7B160
Entry historyiIntegrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: November 22, 2017
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported