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Protein
Submitted name:

D-alanine--D-alanine ligase

Gene

Tmath_0117

Organism
Thermoanaerobacter mathranii subsp. mathranii (strain DSM 11426 / CIP 108742 / A3)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cell wall formation.SAAS annotation

Catalytic activityi

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotation

Cofactori

Protein has several cofactor binding sites:
  • Mg2+SAAS annotation
  • Mn2+SAAS annotation

Pathwayi: peptidoglycan biosynthesis

This protein is involved in the pathway peptidoglycan biosynthesis, which is part of Cell wall biogenesis.SAAS annotation
View all proteins of this organism that are known to be involved in the pathway peptidoglycan biosynthesis and in Cell wall biogenesis.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseSAAS annotationImported

Keywords - Biological processi

Cell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation

Keywords - Ligandi

ATP-bindingSAAS annotation, MagnesiumSAAS annotation, ManganeseSAAS annotation, Metal-bindingSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciTMAT583358:GHOX-125-MONOMER.
UniPathwayiUPA00219.

Names & Taxonomyi

Protein namesi
Submitted name:
D-alanine--D-alanine ligaseImported (EC:6.3.2.4Imported)
Gene namesi
Ordered Locus Names:Tmath_0117Imported
OrganismiThermoanaerobacter mathranii subsp. mathranii (strain DSM 11426 / CIP 108742 / A3)Imported
Taxonomic identifieri583358 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeThermoanaerobacter
Proteomesi
  • UP000002064 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

Keywords - Cellular componenti

CytoplasmSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliD7AQL6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini105 – 316ATP-graspInterPro annotationAdd BLAST212

Sequence similaritiesi

Belongs to the D-alanine--D-alanine ligase family.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000037520.
KOiK01921.
OMAiIKCPMEV.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR011095. Dala_Dala_lig_C.
[Graphical view]
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
PROSITEiPS50975. ATP_GRASP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7AQL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIGVLWRKF RNVEFQRKLM PDKVYDDAYD EAYHHYMAIK EAGFDSVLIE
60 70 80 90 100
WKEDPLETYE TIKKEKVDLI FNASSMKEVA FLEVFNIPYV GSGLDLVATD
110 120 130 140 150
KRMRKDIVAF HGLPTPKYVV AKNSQEIPPV GHLRFPLFVK PISGRGSAGI
160 170 180 190 200
DEENIVYDKD KLPQVVRKIT EKIGQAALIE EFIEGKEVTV GIIGYKHPQV
210 220 230 240 250
LPLLEVGYNN VKTNTYEHKM FDNEIIKCPM EVSKEVEEKI KETALNIYKV
260 270 280 290 300
LNAKDFARID MILSKDNVPY FLELNTFAGL TMSSSKGEKH VHHGYMGYMA
310 320
KAAGLTRGEF IGKIIESAIE RYKLK
Length:325
Mass (Da):37,177
Last modified:August 10, 2010 - v1
Checksum:iE1D790FF04FD031D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002032 Genomic DNA. Translation: ADH59902.1.
RefSeqiWP_013149574.1. NC_014209.1.

Genome annotation databases

EnsemblBacteriaiADH59902; ADH59902; Tmath_0117.
KEGGitmt:Tmath_0117.
PATRICi38278262. VBITheMat18_0120.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002032 Genomic DNA. Translation: ADH59902.1.
RefSeqiWP_013149574.1. NC_014209.1.

3D structure databases

ProteinModelPortaliD7AQL6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADH59902; ADH59902; Tmath_0117.
KEGGitmt:Tmath_0117.
PATRICi38278262. VBITheMat18_0120.

Phylogenomic databases

HOGENOMiHOG000037520.
KOiK01921.
OMAiIKCPMEV.

Enzyme and pathway databases

UniPathwayiUPA00219.
BioCyciTMAT583358:GHOX-125-MONOMER.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR011095. Dala_Dala_lig_C.
[Graphical view]
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
PROSITEiPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD7AQL6_THEM3
AccessioniPrimary (citable) accession number: D7AQL6
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: November 30, 2016
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.