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Protein
Submitted name:

Pyridoxal-5'-phosphate-dependent decarboxylase

Gene

KN400_1732

Organism
Geobacter sulfurreducens (strain DL-1 / KN400)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciGSUL663917:GLDN-1675-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-5'-phosphate-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:KN400_1732Imported
OrganismiGeobacter sulfurreducens (strain DL-1 / KN400)Imported
Taxonomic identifieri663917 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000000389: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD7AJE0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

D7AJE0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKNRDAARA SLENLYRIFT VPEAPDSTLG AIDQAISGDV TGFLQTHIVA
60 70 80 90 100
IERDLEDIEA NFSSFSIPEE PTYVSEYTEF VKENLVAHSV HTASPAFVGH
110 120 130 140 150
MTSALPYFML PLARLMTALN QNVVKVETSK AFTPMERQVL AMLHHLVYRR
160 170 180 190 200
DEDFYPSWIH NSRHALGAFC SGGTIANITA LWVARNRLFA PNGAFRGIAQ
210 220 230 240 250
EGLARALKHR GADGIAVLVS ERGHYSLGKA TDLLGIGRDD LVKVKTDANN
260 270 280 290 300
RIDLKALREE CRRFQDRNTL PLALVGIAGT TETGNVDPLE AMADLAQELG
310 320 330 340 350
CHFHVDAAWG GPTLFSDRHR SLLKGIERAD SVTIDGHKQL YVPMGAGMVV
360 370 380 390 400
FKDPTALSAI EHHANYILRH GSKDLGSHTL EGSRPGKAML VHAGFSIIGR
410 420 430 440 450
KGYELLIDMG IERARTFADM IKQHPDFELI SEPELNILTY RYCPAAVQQT
460 470 480 490 500
LHDVTDRERA DINALLDLVC QLLQKFQREA GKTFVSRTRL HVARHDRELT
510 520 530 540 550
VLRVVLANPL TTDEILESVL AEQCELVQLP EIQAVLQQVE ELCTGLAKAA

SW
Length:552
Mass (Da):61,160
Last modified:August 10, 2010 - v1
Checksum:iBD22CB0295BE5A1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002031 Genomic DNA. Translation: ADI84544.1.
RefSeqiWP_010942351.1. NC_017454.1.
YP_006890692.1. NC_017454.1.

Genome annotation databases

EnsemblBacteriaiADI84544; ADI84544; KN400_1732.
GeneIDi12439806.
KEGGigsk:KN400_1732.
PATRICi43027492. VBIGeoSul143269_1725.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002031 Genomic DNA. Translation: ADI84544.1.
RefSeqiWP_010942351.1. NC_017454.1.
YP_006890692.1. NC_017454.1.

3D structure databases

ProteinModelPortaliD7AJE0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADI84544; ADI84544; KN400_1732.
GeneIDi12439806.
KEGGigsk:KN400_1732.
PATRICi43027492. VBIGeoSul143269_1725.

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.

Enzyme and pathway databases

BioCyciGSUL663917:GLDN-1675-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads."
    Nagarajan H., Butler J.E., Klimes A., Qiu Y., Zengler K., Ward J., Young N.D., Methe B.A., Palsson B.O., Lovley D.R., Barrett C.L.
    PLoS ONE 5:E10922-E10922(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DL-1 / KN400Imported.

Entry informationi

Entry nameiD7AJE0_GEOSK
AccessioniPrimary (citable) accession number: D7AJE0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: January 7, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.