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Protein
Submitted name:

Cytochrome c, 3 heme-binding sites

Gene

ppcA

Organism
Geobacter sulfurreducens (strain DL-1 / KN400)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi37 – 371Iron (heme 1 axial ligand); via tele nitrogenCombined sources
Metal bindingi40 – 401Iron (heme 3 axial ligand); via tele nitrogenCombined sources
Binding sitei47 – 471Heme 1 (covalent)Combined sources
Binding sitei50 – 501Heme 1 (covalent)Combined sources
Metal bindingi51 – 511Iron (heme 1 axial ligand); via tele nitrogenCombined sources
Metal bindingi67 – 671Iron (heme 2 axial ligand); via tele nitrogenCombined sources
Binding sitei71 – 711Heme 3 (covalent)Combined sources
Binding sitei74 – 741Heme 3 (covalent)Combined sources
Metal bindingi75 – 751Iron (heme 3 axial ligand); via tele nitrogenCombined sources
Binding sitei85 – 851Heme 2 (covalent)Combined sources
Binding sitei88 – 881Heme 2 (covalent)Combined sources
Metal bindingi89 – 891Iron (heme 2 axial ligand); via tele nitrogenCombined sources

GO - Molecular functioni

  1. electron carrier activity Source: InterPro
  2. heme binding Source: InterPro
  3. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

HemeCombined sources, Iron, Metal-binding

Enzyme and pathway databases

BioCyciGSUL663917:GLDN-590-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Cytochrome c, 3 heme-binding sitesImported
Gene namesi
Name:ppcAImported
Ordered Locus Names:KN400_0591Imported
OrganismiGeobacter sulfurreducens (strain DL-1 / KN400)Imported
Taxonomic identifieri663917 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000000389 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2LZZNMR-A21-91[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000136348.

Family and domain databases

InterProiIPR002322. Cyt_c_III.
IPR029467. Cytochrome_c3/c7.
[Graphical view]
PfamiPF14522. Cytochrome_C7. 1 hit.
[Graphical view]
PRINTSiPR00609. CYTOCHROMEC3.

Sequencei

Sequence statusi: Complete.

D7AFU0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKVIASLAL SVFCAGLAFA ADDIVLKAKN GDVKFPHKAH QKAVPDCKKC
60 70 80 90
HEKGPGKIEG FGKEMAHGKG CKGCHEEMKK GPTKCGECHK K
Length:91
Mass (Da):9,748
Last modified:August 9, 2010 - v1
Checksum:iC87AB91F7834E086
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002031 Genomic DNA. Translation: ADI83454.1.
RefSeqiYP_006889630.1. NC_017454.1.

Genome annotation databases

EnsemblBacteriaiADI83454; ADI83454; KN400_0591.
KEGGigsk:KN400_0591.
PATRICi43025198. VBIGeoSul143269_0597.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002031 Genomic DNA. Translation: ADI83454.1.
RefSeqiYP_006889630.1. NC_017454.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2LZZNMR-A21-91[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADI83454; ADI83454; KN400_0591.
KEGGigsk:KN400_0591.
PATRICi43025198. VBIGeoSul143269_0597.

Phylogenomic databases

HOGENOMiHOG000136348.

Enzyme and pathway databases

BioCyciGSUL663917:GLDN-590-MONOMER.

Family and domain databases

InterProiIPR002322. Cyt_c_III.
IPR029467. Cytochrome_c3/c7.
[Graphical view]
PfamiPF14522. Cytochrome_C7. 1 hit.
[Graphical view]
PRINTSiPR00609. CYTOCHROMEC3.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads."
    Nagarajan H., Butler J.E., Klimes A., Qiu Y., Zengler K., Ward J., Young N.D., Methe B.A., Palsson B.O., Lovley D.R., Barrett C.L.
    PLoS ONE 5:E10922-E10922(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DL-1 / KN400Imported.
  2. "Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15."
    Dantas J.M., Morgado L., Pokkuluri P.R., Turner D.L., Salgueiro C.A.
    Biochim. Biophys. Acta 1827:484-492(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 21-91 IN COMPLEX WITH HEME.

Entry informationi

Entry nameiD7AFU0_GEOSK
AccessioniPrimary (citable) accession number: D7AFU0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 9, 2010
Last sequence update: August 9, 2010
Last modified: March 31, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.