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Protein

Transport permease protein

Gene

Snov_1041

Organism
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-1036-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Transport permease proteinUniRule annotation
Gene namesi
Ordered Locus Names:Snov_1041Imported
OrganismiStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Imported
Taxonomic identifieri639283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeStarkeya
Proteomesi
  • UP000006633 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 28HelicalUniRule annotationAdd BLAST17
Transmembranei40 – 64HelicalUniRule annotationAdd BLAST25
Transmembranei70 – 91HelicalUniRule annotationAdd BLAST22
Transmembranei117 – 145HelicalUniRule annotationAdd BLAST29
Transmembranei151 – 173HelicalUniRule annotationAdd BLAST23
Transmembranei185 – 204HelicalUniRule annotationAdd BLAST20
Transmembranei216 – 236HelicalUniRule annotationAdd BLAST21
Transmembranei243 – 263HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membraneUniRule annotation, Membrane

Interactioni

Protein-protein interaction databases

STRINGi639283.Snov_1041.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 237ABC2_membraneInterPro annotationAdd BLAST216

Sequence similaritiesi

Belongs to the ABC-2 integral membrane protein family.UniRule annotation
Contains 1 ABC transmembrane type-2 domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiENOG4105F7Z. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000223008.
KOiK01992.
OMAiRFLHQRE.
OrthoDBiPOG091H0KRI.

Family and domain databases

InterProiIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR022403. Alc_ABC_transptr_permease.
[Graphical view]
PfamiPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFiPIRSF006648. DrrB. 1 hit.
TIGRFAMsiTIGR03861. phenyl_ABC_PedC. 1 hit.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7A6Y7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSPSPRFRL PLGGYLVVLA GICWREALRF LNQRGRFLSA LVRPLVWLFI
60 70 80 90 100
FAAGFRSVLG VSIIPPYETY VLYEVYVTPG LVAMIQLFNG LQSSLSMVYD
110 120 130 140 150
REVGAMRILL VSPYPRWFLL VSKLLAGICV SLLQVYAFLA VAWFWEVELP
160 170 180 190 200
PIGYIAVLPA LLLTGLMLGA MGLLMSSVFR QMENFASVMN FVIFPMFFAS
210 220 230 240 250
SALYPLWRVQ ESSLVLWWIC TLNPFTYAVE LIRFALYGQF EPLSALVVAG
260 270 280
CAVVFLGASI LAYDPSAGVM ARRGGPENAR
Length:280
Mass (Da):31,237
Last modified:August 10, 2010 - v1
Checksum:i53AF8DD8D6C0E7C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002026 Genomic DNA. Translation: ADH88361.1.

Genome annotation databases

EnsemblBacteriaiADH88361; ADH88361; Snov_1041.
KEGGisno:Snov_1041.
PATRICi38254627. VBIStaNov45716_1044.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002026 Genomic DNA. Translation: ADH88361.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi639283.Snov_1041.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADH88361; ADH88361; Snov_1041.
KEGGisno:Snov_1041.
PATRICi38254627. VBIStaNov45716_1044.

Phylogenomic databases

eggNOGiENOG4105F7Z. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000223008.
KOiK01992.
OMAiRFLHQRE.
OrthoDBiPOG091H0KRI.

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-1036-MONOMER.

Family and domain databases

InterProiIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR022403. Alc_ABC_transptr_permease.
[Graphical view]
PfamiPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFiPIRSF006648. DrrB. 1 hit.
TIGRFAMsiTIGR03861. phenyl_ABC_PedC. 1 hit.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD7A6Y7_STAND
AccessioniPrimary (citable) accession number: D7A6Y7
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: November 2, 2016
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.