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D7A5M0

- D7A5M0_STAND

UniProt

D7A5M0 - D7A5M0_STAND

Protein
Submitted name:

DNA ligase D

Gene

Snov_0819

Organism
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (10 Aug 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSNOV639283:GCS4-828-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Snov_0819Imported
    OrganismiStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Imported
    Taxonomic identifieri639283 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeStarkeya
    ProteomesiUP000006633: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D7A5M0-1 [UniParc]FASTAAdd to Basket

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    MGLETYRRKR DFNTTSEPKG RTSRRAGNLY LIQKHDARRL HYDFRLEMDG    50
    VLKSWAVTRG PSLVPGEKRL AVHVEDHPLD YGSFEGTIPK GEYGGGTVML 100
    WDTGTWTPIG DAHVAYKKGH LEFELDGEKL HGRWHLVRMH PRPREKKENW 150
    LLIKGEDEFA RTEEQSDILE ELPDSVKTGR DLDAIAKDAP GWSSKTGRLR 200
    PAPKPKATPA KAKAASGGAA KRKTVAGAPL PDFIEPQLAT LVDKAPSGTR 250
    WVHEIKFDGY RLEVRIEDGE VRLLTRTGLD WTARFGSRLV EAFKALPLSN 300
    ALIDGELVVE GGNGASHFST LQADLSEERT DRFLFYAFDL LFLDGEDLRS 350
    KPLVERKAAL AKLLAGVPDP LRYSEHFDED GDVMLRHACR LSLEGLVSKL 400
    ADAPYRSGRS KDWRKSKCTE RQEFVIGGYV PSTVSNHAIG SLVLGVYEAG 450
    KLGGKLRHVG RVGTGYTARV AADLWKQLQP LARDKSPFAG KLAAEAARGV 500
    HFVEPTLVAE IEFRGWTGER NLRHASYRGL REDKPAAEVV QEGAPEMNAD 550
    RPPGSSVKLT HPDRIYWPED GVTKQGLVDY YTQVWPKIAP FIVARPLALL 600
    RCPDGIAEAC FFQKHAWRGI NKAVKLVPDP KDKGGEPLLT ISDFDGLIAL 650
    VQAGTLEIHP WGAPLAGLEK PDMLIFDLDP GPGVGWPEVI AAAKEVRARL 700
    EADEMAAFVK TSGGKGLHVV TPLSSKAGWA PAKEYAKAVA DAMAADDPDR 750
    FISVATKAKR GGRIFVDYLR NARGATAVAP YSSRARAGAA VSMPVTWAEL 800
    DQLASAAQYT VDNAPTRLAS LDADPWEDFR AAAKPLPAGK KR 842
    Length:842
    Mass (Da):92,477
    Last modified:August 10, 2010 - v1
    Checksum:iFBD74CBB0D841233
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002026 Genomic DNA. Translation: ADH88144.1.
    RefSeqiYP_003692763.1. NC_014217.1.

    Genome annotation databases

    EnsemblBacteriaiADH88144; ADH88144; Snov_0819.
    GeneIDi9331878.
    KEGGisno:Snov_0819.
    PATRICi38254173. VBIStaNov45716_0819.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002026 Genomic DNA. Translation: ADH88144.1 .
    RefSeqi YP_003692763.1. NC_014217.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADH88144 ; ADH88144 ; Snov_0819 .
    GeneIDi 9331878.
    KEGGi sno:Snov_0819.
    PATRICi 38254173. VBIStaNov45716_0819.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.

    Enzyme and pathway databases

    BioCyci SNOV639283:GCS4-828-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113Imported.

    Entry informationi

    Entry nameiD7A5M0_STAND
    AccessioniPrimary (citable) accession number: D7A5M0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 10, 2010
    Last sequence update: August 10, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3