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D7A5M0

- D7A5M0_STAND

UniProt

D7A5M0 - D7A5M0_STAND

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Protein
Submitted name: DNA ligase D
Gene
Snov_0819
Organism
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-828-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Snov_0819Imported
OrganismiStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Imported
Taxonomic identifieri639283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeStarkeya
ProteomesiUP000006633: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7A5M0-1 [UniParc]FASTAAdd to Basket

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MGLETYRRKR DFNTTSEPKG RTSRRAGNLY LIQKHDARRL HYDFRLEMDG    50
VLKSWAVTRG PSLVPGEKRL AVHVEDHPLD YGSFEGTIPK GEYGGGTVML 100
WDTGTWTPIG DAHVAYKKGH LEFELDGEKL HGRWHLVRMH PRPREKKENW 150
LLIKGEDEFA RTEEQSDILE ELPDSVKTGR DLDAIAKDAP GWSSKTGRLR 200
PAPKPKATPA KAKAASGGAA KRKTVAGAPL PDFIEPQLAT LVDKAPSGTR 250
WVHEIKFDGY RLEVRIEDGE VRLLTRTGLD WTARFGSRLV EAFKALPLSN 300
ALIDGELVVE GGNGASHFST LQADLSEERT DRFLFYAFDL LFLDGEDLRS 350
KPLVERKAAL AKLLAGVPDP LRYSEHFDED GDVMLRHACR LSLEGLVSKL 400
ADAPYRSGRS KDWRKSKCTE RQEFVIGGYV PSTVSNHAIG SLVLGVYEAG 450
KLGGKLRHVG RVGTGYTARV AADLWKQLQP LARDKSPFAG KLAAEAARGV 500
HFVEPTLVAE IEFRGWTGER NLRHASYRGL REDKPAAEVV QEGAPEMNAD 550
RPPGSSVKLT HPDRIYWPED GVTKQGLVDY YTQVWPKIAP FIVARPLALL 600
RCPDGIAEAC FFQKHAWRGI NKAVKLVPDP KDKGGEPLLT ISDFDGLIAL 650
VQAGTLEIHP WGAPLAGLEK PDMLIFDLDP GPGVGWPEVI AAAKEVRARL 700
EADEMAAFVK TSGGKGLHVV TPLSSKAGWA PAKEYAKAVA DAMAADDPDR 750
FISVATKAKR GGRIFVDYLR NARGATAVAP YSSRARAGAA VSMPVTWAEL 800
DQLASAAQYT VDNAPTRLAS LDADPWEDFR AAAKPLPAGK KR 842
Length:842
Mass (Da):92,477
Last modified:August 10, 2010 - v1
Checksum:iFBD74CBB0D841233
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002026 Genomic DNA. Translation: ADH88144.1.
RefSeqiYP_003692763.1. NC_014217.1.

Genome annotation databases

EnsemblBacteriaiADH88144; ADH88144; Snov_0819.
GeneIDi9331878.
KEGGisno:Snov_0819.
PATRICi38254173. VBIStaNov45716_0819.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002026 Genomic DNA. Translation: ADH88144.1 .
RefSeqi YP_003692763.1. NC_014217.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADH88144 ; ADH88144 ; Snov_0819 .
GeneIDi 9331878.
KEGGi sno:Snov_0819.
PATRICi 38254173. VBIStaNov45716_0819.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.

Enzyme and pathway databases

BioCyci SNOV639283:GCS4-828-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113.

Entry informationi

Entry nameiD7A5M0_STAND
AccessioniPrimary (citable) accession number: D7A5M0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 14, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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