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Protein
Submitted name:

DNA ligase D

Gene

Snov_0819

Organism
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-828-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Snov_0819Imported
OrganismiStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Imported
Taxonomic identifieri639283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeStarkeya
ProteomesiUP000006633 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7A5M0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLETYRRKR DFNTTSEPKG RTSRRAGNLY LIQKHDARRL HYDFRLEMDG
60 70 80 90 100
VLKSWAVTRG PSLVPGEKRL AVHVEDHPLD YGSFEGTIPK GEYGGGTVML
110 120 130 140 150
WDTGTWTPIG DAHVAYKKGH LEFELDGEKL HGRWHLVRMH PRPREKKENW
160 170 180 190 200
LLIKGEDEFA RTEEQSDILE ELPDSVKTGR DLDAIAKDAP GWSSKTGRLR
210 220 230 240 250
PAPKPKATPA KAKAASGGAA KRKTVAGAPL PDFIEPQLAT LVDKAPSGTR
260 270 280 290 300
WVHEIKFDGY RLEVRIEDGE VRLLTRTGLD WTARFGSRLV EAFKALPLSN
310 320 330 340 350
ALIDGELVVE GGNGASHFST LQADLSEERT DRFLFYAFDL LFLDGEDLRS
360 370 380 390 400
KPLVERKAAL AKLLAGVPDP LRYSEHFDED GDVMLRHACR LSLEGLVSKL
410 420 430 440 450
ADAPYRSGRS KDWRKSKCTE RQEFVIGGYV PSTVSNHAIG SLVLGVYEAG
460 470 480 490 500
KLGGKLRHVG RVGTGYTARV AADLWKQLQP LARDKSPFAG KLAAEAARGV
510 520 530 540 550
HFVEPTLVAE IEFRGWTGER NLRHASYRGL REDKPAAEVV QEGAPEMNAD
560 570 580 590 600
RPPGSSVKLT HPDRIYWPED GVTKQGLVDY YTQVWPKIAP FIVARPLALL
610 620 630 640 650
RCPDGIAEAC FFQKHAWRGI NKAVKLVPDP KDKGGEPLLT ISDFDGLIAL
660 670 680 690 700
VQAGTLEIHP WGAPLAGLEK PDMLIFDLDP GPGVGWPEVI AAAKEVRARL
710 720 730 740 750
EADEMAAFVK TSGGKGLHVV TPLSSKAGWA PAKEYAKAVA DAMAADDPDR
760 770 780 790 800
FISVATKAKR GGRIFVDYLR NARGATAVAP YSSRARAGAA VSMPVTWAEL
810 820 830 840
DQLASAAQYT VDNAPTRLAS LDADPWEDFR AAAKPLPAGK KR
Length:842
Mass (Da):92,477
Last modified:August 9, 2010 - v1
Checksum:iFBD74CBB0D841233
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002026 Genomic DNA. Translation: ADH88144.1.
RefSeqiWP_013165649.1. NC_014217.1.
YP_003692763.1. NC_014217.1.

Genome annotation databases

EnsemblBacteriaiADH88144; ADH88144; Snov_0819.
KEGGisno:Snov_0819.
PATRICi38254173. VBIStaNov45716_0819.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002026 Genomic DNA. Translation: ADH88144.1.
RefSeqiWP_013165649.1. NC_014217.1.
YP_003692763.1. NC_014217.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADH88144; ADH88144; Snov_0819.
KEGGisno:Snov_0819.
PATRICi38254173. VBIStaNov45716_0819.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-828-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113Imported.

Entry informationi

Entry nameiD7A5M0_STAND
AccessioniPrimary (citable) accession number: D7A5M0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 9, 2010
Last sequence update: August 9, 2010
Last modified: March 31, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.