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D7A5M0 (D7A5M0_STAND) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length842 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADH88144.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D7A5M0 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: FBD74CBB0D841233

FASTA84292,477
        10         20         30         40         50         60 
MGLETYRRKR DFNTTSEPKG RTSRRAGNLY LIQKHDARRL HYDFRLEMDG VLKSWAVTRG 

        70         80         90        100        110        120 
PSLVPGEKRL AVHVEDHPLD YGSFEGTIPK GEYGGGTVML WDTGTWTPIG DAHVAYKKGH 

       130        140        150        160        170        180 
LEFELDGEKL HGRWHLVRMH PRPREKKENW LLIKGEDEFA RTEEQSDILE ELPDSVKTGR 

       190        200        210        220        230        240 
DLDAIAKDAP GWSSKTGRLR PAPKPKATPA KAKAASGGAA KRKTVAGAPL PDFIEPQLAT 

       250        260        270        280        290        300 
LVDKAPSGTR WVHEIKFDGY RLEVRIEDGE VRLLTRTGLD WTARFGSRLV EAFKALPLSN 

       310        320        330        340        350        360 
ALIDGELVVE GGNGASHFST LQADLSEERT DRFLFYAFDL LFLDGEDLRS KPLVERKAAL 

       370        380        390        400        410        420 
AKLLAGVPDP LRYSEHFDED GDVMLRHACR LSLEGLVSKL ADAPYRSGRS KDWRKSKCTE 

       430        440        450        460        470        480 
RQEFVIGGYV PSTVSNHAIG SLVLGVYEAG KLGGKLRHVG RVGTGYTARV AADLWKQLQP 

       490        500        510        520        530        540 
LARDKSPFAG KLAAEAARGV HFVEPTLVAE IEFRGWTGER NLRHASYRGL REDKPAAEVV 

       550        560        570        580        590        600 
QEGAPEMNAD RPPGSSVKLT HPDRIYWPED GVTKQGLVDY YTQVWPKIAP FIVARPLALL 

       610        620        630        640        650        660 
RCPDGIAEAC FFQKHAWRGI NKAVKLVPDP KDKGGEPLLT ISDFDGLIAL VQAGTLEIHP 

       670        680        690        700        710        720 
WGAPLAGLEK PDMLIFDLDP GPGVGWPEVI AAAKEVRARL EADEMAAFVK TSGGKGLHVV 

       730        740        750        760        770        780 
TPLSSKAGWA PAKEYAKAVA DAMAADDPDR FISVATKAKR GGRIFVDYLR NARGATAVAP 

       790        800        810        820        830        840 
YSSRARAGAA VSMPVTWAEL DQLASAAQYT VDNAPTRLAS LDADPWEDFR AAAKPLPAGK 


KR

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References

[1]"Complete sequence of Starkeya novella DSM 506."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Brettin T., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Beatson S., Kappler U., Woyke T.
Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002026 Genomic DNA. Translation: ADH88144.1.
RefSeqYP_003692763.1. NC_014217.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADH88144; ADH88144; Snov_0819.
GeneID9331878.
KEGGsno:Snov_0819.
PATRIC38254173. VBIStaNov45716_0819.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD7A5M0_STAND
AccessionPrimary (citable) accession number: D7A5M0
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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