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D7A5M0

- D7A5M0_STAND

UniProt

D7A5M0 - D7A5M0_STAND

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Protein
Submitted name:

DNA ligase D

Gene

Snov_0819

Organism
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-828-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Snov_0819Imported
OrganismiStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Imported
Taxonomic identifieri639283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeStarkeya
ProteomesiUP000006633: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7A5M0-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MGLETYRRKR DFNTTSEPKG RTSRRAGNLY LIQKHDARRL HYDFRLEMDG
60 70 80 90 100
VLKSWAVTRG PSLVPGEKRL AVHVEDHPLD YGSFEGTIPK GEYGGGTVML
110 120 130 140 150
WDTGTWTPIG DAHVAYKKGH LEFELDGEKL HGRWHLVRMH PRPREKKENW
160 170 180 190 200
LLIKGEDEFA RTEEQSDILE ELPDSVKTGR DLDAIAKDAP GWSSKTGRLR
210 220 230 240 250
PAPKPKATPA KAKAASGGAA KRKTVAGAPL PDFIEPQLAT LVDKAPSGTR
260 270 280 290 300
WVHEIKFDGY RLEVRIEDGE VRLLTRTGLD WTARFGSRLV EAFKALPLSN
310 320 330 340 350
ALIDGELVVE GGNGASHFST LQADLSEERT DRFLFYAFDL LFLDGEDLRS
360 370 380 390 400
KPLVERKAAL AKLLAGVPDP LRYSEHFDED GDVMLRHACR LSLEGLVSKL
410 420 430 440 450
ADAPYRSGRS KDWRKSKCTE RQEFVIGGYV PSTVSNHAIG SLVLGVYEAG
460 470 480 490 500
KLGGKLRHVG RVGTGYTARV AADLWKQLQP LARDKSPFAG KLAAEAARGV
510 520 530 540 550
HFVEPTLVAE IEFRGWTGER NLRHASYRGL REDKPAAEVV QEGAPEMNAD
560 570 580 590 600
RPPGSSVKLT HPDRIYWPED GVTKQGLVDY YTQVWPKIAP FIVARPLALL
610 620 630 640 650
RCPDGIAEAC FFQKHAWRGI NKAVKLVPDP KDKGGEPLLT ISDFDGLIAL
660 670 680 690 700
VQAGTLEIHP WGAPLAGLEK PDMLIFDLDP GPGVGWPEVI AAAKEVRARL
710 720 730 740 750
EADEMAAFVK TSGGKGLHVV TPLSSKAGWA PAKEYAKAVA DAMAADDPDR
760 770 780 790 800
FISVATKAKR GGRIFVDYLR NARGATAVAP YSSRARAGAA VSMPVTWAEL
810 820 830 840
DQLASAAQYT VDNAPTRLAS LDADPWEDFR AAAKPLPAGK KR
Length:842
Mass (Da):92,477
Last modified:August 10, 2010 - v1
Checksum:iFBD74CBB0D841233
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002026 Genomic DNA. Translation: ADH88144.1.
RefSeqiWP_013165649.1. NC_014217.1.
YP_003692763.1. NC_014217.1.

Genome annotation databases

EnsemblBacteriaiADH88144; ADH88144; Snov_0819.
GeneIDi9331878.
KEGGisno:Snov_0819.
PATRICi38254173. VBIStaNov45716_0819.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002026 Genomic DNA. Translation: ADH88144.1 .
RefSeqi WP_013165649.1. NC_014217.1.
YP_003692763.1. NC_014217.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADH88144 ; ADH88144 ; Snov_0819 .
GeneIDi 9331878.
KEGGi sno:Snov_0819.
PATRICi 38254173. VBIStaNov45716_0819.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.

Enzyme and pathway databases

BioCyci SNOV639283:GCS4-828-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113Imported.

Entry informationi

Entry nameiD7A5M0_STAND
AccessioniPrimary (citable) accession number: D7A5M0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: October 29, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3