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D7A343

- D7A343_STAND

UniProt

D7A343 - D7A343_STAND

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Protein
Ribulose bisphosphate carboxylase large chain
Gene
cbbL, Snov_0428
Organism
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.UniRule annotation

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Binds 1 magnesium ion per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei128 – 1281Substrate; in homodimeric partner By similarityUniRule annotation
Binding sitei178 – 1781Substrate By similarityUniRule annotation
Active sitei180 – 1801Proton acceptor By similarityUniRule annotation
Binding sitei182 – 1821Substrate By similarityUniRule annotation
Metal bindingi206 – 2061Magnesium; via carbamate group By similarityUniRule annotation
Metal bindingi208 – 2081Magnesium By similarityUniRule annotation
Metal bindingi209 – 2091Magnesium By similarityUniRule annotation
Active sitei298 – 2981Proton acceptor By similarityUniRule annotation
Binding sitei299 – 2991Substrate By similarityUniRule annotation
Binding sitei331 – 3311Substrate By similarityUniRule annotation
Sitei338 – 3381Transition state stabilizer By similarityUniRule annotation
Binding sitei383 – 3831Substrate By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciSNOV639283:GCS4-435-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Short name:
RuBisCO large subunitUniRule annotation
Gene namesi
Name:cbbLUniRule annotation
Ordered Locus Names:Snov_0428Imported
OrganismiStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Imported
Taxonomic identifieri639283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeStarkeya
ProteomesiUP000006633: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei206 – 2061N6-carboxylysine By similarityUniRule annotation

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains By similarity.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliD7A343.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.
OMAiFTQDWAS.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D7A343-1 [UniParc]FASTAAdd to Basket

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MNAIDKTASA DKPRSRYSAG VMEYRKMGYW QPDYEPKDTD VIALFRVTPQ    50
DGVDPIEASA AVAGESSTAT WTVVWTDRLT ACDKYRAKCY RVDPVPNSPG 100
SWFAYIAYDL DLFEPGSISN LSASIIGNVF GFKPLKALRL EDMRLPVAYV 150
KTFDGPATGI VVERERLDKF GRPLLGATVK PKLGLSGRNY GRVVYEALKG 200
GLDFTKDDEN INSQPFMHWR ERFLYCMEAV NKAQASTGEI KGTYLNVTAG 250
TMEDMYERAD FAKSLGSNIV MIDLVIGYTA IQSMAKWARR NDMILHLHRA 300
GHSTYTRQKS HGVSFRVIAK WMRLAGVDHI HAGTVVGKLE GDPHTTKGYY 350
DICRDDFVPQ NLAHGVFFDQ DWASTRKLMP VASGGIHAGQ MHQLIDLLGE 400
DVVLQFGGGT IGHPMGIQAG ATANRVALEC MILARNEGRD ILAEGPDILN 450
EAARHCMPLK QALETWKDVT FNYSSTDTPD FVPQATAAE 489
Length:489
Mass (Da):54,138
Last modified:August 10, 2010 - v1
Checksum:iF62FCB0F0878F040
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002026 Genomic DNA. Translation: ADH87761.1.
RefSeqiWP_013165266.1. NC_014217.1.
YP_003692380.1. NC_014217.1.

Genome annotation databases

EnsemblBacteriaiADH87761; ADH87761; Snov_0428.
GeneIDi9331485.
KEGGisno:Snov_0428.
PATRICi38253389. VBIStaNov45716_0429.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002026 Genomic DNA. Translation: ADH87761.1 .
RefSeqi WP_013165266.1. NC_014217.1.
YP_003692380.1. NC_014217.1.

3D structure databases

ProteinModelPortali D7A343.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADH87761 ; ADH87761 ; Snov_0428 .
GeneIDi 9331485.
KEGGi sno:Snov_0428.
PATRICi 38253389. VBIStaNov45716_0429.

Phylogenomic databases

HOGENOMi HOG000230831.
KOi K01601.
OMAi FTQDWAS.

Enzyme and pathway databases

BioCyci SNOV639283:GCS4-435-MONOMER.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113.

Entry informationi

Entry nameiD7A343_STAND
AccessioniPrimary (citable) accession number: D7A343
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: September 3, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel" By similarity.UniRule annotation

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi