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D6ZYK4 (D6ZYK4_STAND) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Triosephosphate isomerase HAMAP-Rule MF_00147
Short name=TIM HAMAP-Rule MF_00147
EC=5.3.1.1 HAMAP-Rule MF_00147
Alternative name(s):
Triose-phosphate isomerase HAMAP-Rule MF_00147
Gene names
Name:tpiA HAMAP-Rule MF_00147
Ordered Locus Names:Snov_1812 EMBL ADH89116.1
OrganismStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) [Complete proteome] [HAMAP] EMBL ADH89116.1
Taxonomic identifier639283 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Xanthobacteraceae › Starkeya ›

Protein attributes

Sequence length251 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site981Electrophile By similarity HAMAP-Rule MF_00147
Active site1681Proton acceptor By similarity HAMAP-Rule MF_00147
Binding site111Substrate By similarity HAMAP-Rule MF_00147
Binding site131Substrate By similarity HAMAP-Rule MF_00147

Sequences

Sequence LengthMass (Da)Tools
D6ZYK4 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: 58E4ED1C0A96FC5D

FASTA25126,194
        10         20         30         40         50         60 
MSKRRPLVAG NWKMHGLKAS VAEFGRIAAG YDAALKAKVD LLVCPPATLM STLAVAALGT 

        70         80         90        100        110        120 
RIGIGGQDCH AKESGAYTGD IAAEMIADTG AVAVILGHSE RRADHNETDA MARAKVLAAW 

       130        140        150        160        170        180 
RASLTAILCV GETHAERDAF RALDVVRSQL SGSLPDGATA ANTVIAYEPV WAIGTGRTPT 

       190        200        210        220        230        240 
LGDIEEMHGV IRAELRVRFG DDADDMRLLY GGSVKPENAA EILAVADVDG ALVGGASLKA 

       250 
DTFLAIARAY L

« Hide

References

[1]"Complete sequence of Starkeya novella DSM 506."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Brettin T., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Beatson S., Kappler U., Woyke T.
Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002026 Genomic DNA. Translation: ADH89116.1.
RefSeqYP_003693735.1. NC_014217.1.

3D structure databases

ProteinModelPortalD6ZYK4.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADH89116; ADH89116; Snov_1812.
GeneID9332885.
KEGGsno:Snov_1812.
PATRIC38256219. VBIStaNov45716_1828.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000226414.
KOK01803.

Enzyme and pathway databases

BioCycSNOV639283:GCS4-1835-MONOMER.
UniPathwayUPA00109; UER00189.
UPA00138.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
HAMAPMF_00147_B. TIM_B.
InterProIPR013785. Aldolase_TIM.
IPR022896. TrioseP_Isoase_bac/euk.
IPR000652. Triosephosphate_isomerase.
IPR020861. Triosephosphate_isomerase_AS.
[Graphical view]
PANTHERPTHR21139. PTHR21139. 1 hit.
PfamPF00121. TIM. 1 hit.
[Graphical view]
SUPFAMSSF51351. Triophos_ismrse. 1 hit.
TIGRFAMsTIGR00419. tim. 1 hit.
PROSITEPS00171. TIM_1. 1 hit.
PS51440. TIM_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD6ZYK4_STAND
AccessionPrimary (citable) accession number: D6ZYK4
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 29, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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