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D6ZWI7 (D6ZWI7_BIFLJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L1 HAMAP-Rule MF_01318
Gene names
Name:rplA HAMAP-Rule MF_01318 EMBL ADH01243.1
Ordered Locus Names:BLJ_1819
OrganismBifidobacterium longum subsp. longum (strain JDM301) [Complete proteome] [HAMAP] EMBL ADH01243.1
Taxonomic identifier759350 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318

Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318

Sequence similarities

Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Sequences

Sequence LengthMass (Da)Tools
D6ZWI7 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: 238414182BCC500F

FASTA23024,857
        10         20         30         40         50         60 
MVKRSKKYRE AAERVDRNNL YTANEAIALL KSMPAYNFDQ TVEAVFRLSV DPRKADQLVR 

        70         80         90        100        110        120 
GTVNLPHGTG KTAKVLVFAR GPKATEATEA GADIVGDDDL IAKVQGGFLD FDAVVATPDM 

       130        140        150        160        170        180 
MGKVGRLGRV LGPRGLMPNP KTGTVTMDVT KAVKDIKGGK IEFRVDKNGN LSFLIGKMSF 

       190        200        210        220        230 
DESALDENFK AVADEVKRLK PSTVKGRYLT KATITSTMNP GVPVDPNTLA

« Hide

References

[1]"Complete genome sequence of Bifidobacterium longum JDM301."
Wei Y.X., Zhang Z.Y., Liu C., Zhu Y.Z., Zhu Y.Q., Zheng H., Zhao G.P., Wang S., Guo X.K.
J. Bacteriol. 192:4076-4077(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM301 EMBL ADH01243.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002010 Genomic DNA. Translation: ADH01243.1.
RefSeqYP_003662073.1. NC_014169.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADH01243; ADH01243; BLJ_1819.
GeneID9190479.
KEGGbll:BLJ_1819.
PATRIC38141624. VBIBifLon164510_1792.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000207015.
KOK02863.
OMAAKGRYVK.

Enzyme and pathway databases

BioCycBLON759350:GHJA-1811-MONOMER.

Family and domain databases

Gene3D3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
HAMAPMF_01318_B. Ribosomal_L1_B.
InterProIPR005878. Ribosom_L1_bac-type.
IPR002143. Ribosomal_L1.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
IPR023674. Ribosomal_L1_SF.
[Graphical view]
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. Ribosomal_L1. 1 hit.
TIGRFAMsTIGR01169. rplA_bact. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD6ZWI7_BIFLJ
AccessionPrimary (citable) accession number: D6ZWI7
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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