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D6ZU62 (D6ZU62_BIFLJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Orotidine 5'-phosphate decarboxylase HAMAP-Rule MF_01215
EC=4.1.1.23 HAMAP-Rule MF_01215
Alternative name(s):
OMP decarboxylase HAMAP-Rule MF_01215
Gene names
Name:pyrF HAMAP-Rule MF_01215
Ordered Locus Names:BLJ_0953
OrganismBifidobacterium longum subsp. longum (strain JDM301) [Complete proteome] [HAMAP] EMBL ADH00418.1
Taxonomic identifier759350 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length317 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1121Proton donor By similarity HAMAP-Rule MF_01215

Sequences

Sequence LengthMass (Da)Tools
D6ZU62 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: ADF3B52127F69CD1

FASTA31733,742
        10         20         30         40         50         60 
MDRLIEAIDN TQNPSVVGLD PTEALVPPQV VASFADEVRD SVESPEEIES AQLAVAYFEY 

        70         80         90        100        110        120 
NRTIIDAIAD IVPAVKPQIA MYEALGPAGV DIYTMTCEYA AQQGLYVLGD IKRGDIGSTA 

       130        140        150        160        170        180 
AAYAHHLNGV GDFDPWHEDA VTVNPYLGTD GITPFVEAAA EADKDIFVLV RTSNPSSSEL 

       190        200        210        220        230        240 
QMLDLADGAK VYEHVADLVE GWGAETIGSH GYSRVGAVVG ATHPEEGKAL RERMPHTFFL 

       250        260        270        280        290        300 
VPGYGAQGGT AADVAGMFDK QGSGAIVNSS RGIIGAWKKS GKYSESMTAD EALDLVASSA 

       310 
RQAALDMRDN LRVAVYR

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References

[1]"Complete genome sequence of Bifidobacterium longum JDM301."
Wei Y.X., Zhang Z.Y., Liu C., Zhu Y.Z., Zhu Y.Q., Zheng H., Zhao G.P., Wang S., Guo X.K.
J. Bacteriol. 192:4076-4077(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM301 EMBL ADH00418.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002010 Genomic DNA. Translation: ADH00418.1.
RefSeqYP_003661248.1. NC_014169.1.

3D structure databases

ProteinModelPortalD6ZU62.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADH00418; ADH00418; BLJ_0953.
GeneID9189618.
KEGGbll:BLJ_0953.
PATRIC38139869. VBIBifLon164510_0946.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000245747.
KOK01591.
OMALLCRTSN.

Enzyme and pathway databases

BioCycBLON759350:GHJA-950-MONOMER.
UniPathwayUPA00070; UER00120.

Family and domain databases

Gene3D3.20.20.70. 2 hits.
HAMAPMF_01215. OMPdecase_type2.
InterProIPR013785. Aldolase_TIM.
IPR018089. OMPdecase_AS.
IPR011995. OMPdecase_type-2.
IPR001754. OMPdeCOase_dom.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PfamPF00215. OMPdecase. 1 hit.
[Graphical view]
SMARTSM00934. OMPdecase. 1 hit.
[Graphical view]
SUPFAMSSF51366. RibP_bind_barrel. 1 hit.
TIGRFAMsTIGR02127. pyrF_sub2. 1 hit.
PROSITEPS00156. OMPDECASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD6ZU62_BIFLJ
AccessionPrimary (citable) accession number: D6ZU62
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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