D6ZB81 (D6ZB81_SEGRD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Name:	alr
Ordered Locus Names:	Srot_0353

Organism

Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) [Complete proteome] [HAMAP]

Taxonomic identifier

640132 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Segniliparaceae › Segniliparus › Segniliparus rotundus

Protein attributes

Sequence length	397 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622 RuleBase RU004247
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608 EMBL ADG96840.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D6ZB81 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 98853E8F192AE9DB	FASTA	397	41,666
	10 20 30 40 50 60 MIPAVQATVD HHAIAHNVRL LAQASAPAQV IAVLKANAYG HGAVPVARTA LAAGAAQIGV 70 80 90 100 110 120 ATLAEAFELR QGGIEAPIIA WLHAFDPDEA VAVFAEAIAS GIELGVSTSS QVRAVAEAAL 130 140 150 160 170 180 RADQLAVVAV KVDTGLNRGG FARGEWRKAF ADLANAEAAG AVQVRGVFSH LANADRPEYR 190 200 210 220 230 240 TNAEQARSLR EAVSFARAAG LAPELVHLAN SPAVLTRPKA LVNELPVFNA TRPGVAVYGL 250 260 270 280 290 300 SPIMGRDFGL IPAMTLTARV GLTKRIHAGD GVSYGHDFVA ASDTTLALLP IGYADGLQRA 310 320 330 340 350 360 LAGKFEVSIG GRRYPGVGRV CMDQVLVDLG PGEPKVREGD TAVLFGPGSD GEQTADDWAR 370 380 390 AAGTINYEIV TQLRGRVQLR HIHQREPVDQ LRHTHHA

References

[1]

"Complete genome sequence of Segniliparus rotundus type strain (CDC 1076)." Sikorski J., Lapidus A., Copeland A., Misra M., Glavina Del Rio T., Nolan M., Lucas S., Chen F., Tice H., Cheng J.-F., Jando M., Schneider S., Bruce D., Goodwin L., Pitluck S., Liolios K., Mikhailova N., Pati A. , Ivanova N., Mavromatis K., Chen A., Palaniappan K., Chertkov O., Land M., Hauser L., Chang Y.-J., Jeffries C.D., Brettin T., Detter J.C., Han C., Rohde M., Goker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 2:203-211(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001958 Genomic DNA. Translation: ADG96840.1.
RefSeq	YP_003657671.1. NC_014168.1.
3D structure databases
ProteinModelPortal	D6ZB81.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG96840; ADG96840; Srot_0353.
GeneID	9178387.
KEGG	srt:Srot_0353.
PATRIC	38246887. VBISegRot51051_0354.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	PRIPRRY.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D6ZB81_SEGRD

Accession

Primary (citable) accession number: D6ZB81

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)