D6Z9Y0 (D6Z9Y0_SEGRD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000716

Gene names

Ordered Locus Names:

Srot_2198

Organism

Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) [Complete proteome] [HAMAP]

Taxonomic identifier

640132 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Segniliparaceae › Segniliparus › Segniliparus rotundus

Protein attributes

Sequence length	256 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS013325 RuleBase RU000716
Molecular function	Sigma factor SAAS SAAS013325 RuleBase RU000716
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D6Z9Y0 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 7FB55070FC132275	FASTA	256	28,900
	10 20 30 40 50 60 MSVLCPERRT DAAALLLKDA PSSMFSKPPR GARMPVKDSA EEPLSRSSQS QAELSRRFEQ 70 80 90 100 110 120 EAMPLLDKLY WAAMRMTHNP QDAEDLVQET YIKAFGAFHT FAEGTNLSAW LHRILTNTYI 130 140 150 160 170 180 NSYRKRQRQP SQYPTDEITD WQLADVASHD SVGLRSAEVE ALDGLPDTEI MKALQSLPED 190 200 210 220 230 240 FRMVVYYADV EGFPYREIAD ILEIPIGTVM SRLHRGRKQL RSQLEGLAAE YGIGPEARRN 250 GRGHSAVENE NEEVAS

References

[1]

"Complete genome sequence of Segniliparus rotundus type strain (CDC 1076)." Sikorski J., Lapidus A., Copeland A., Misra M., Glavina Del Rio T., Nolan M., Lucas S., Chen F., Tice H., Cheng J.-F., Jando M., Schneider S., Bruce D., Goodwin L., Pitluck S., Liolios K., Mikhailova N., Pati A. , Ivanova N., Mavromatis K., Chen A., Palaniappan K., Chertkov O., Land M., Hauser L., Chang Y.-J., Jeffries C.D., Brettin T., Detter J.C., Han C., Rohde M., Goker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 2:203-211(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001958 Genomic DNA. Translation: ADG98650.1.
RefSeq	YP_003659481.1. NC_014168.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG98650; ADG98650; Srot_2198.
GeneID	9180264.
KEGG	srt:Srot_2198.
PATRIC	38250712. VBISegRot51051_2236.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000094755.
KO	K03088.
OMA	RIMTNAY.
Enzyme and pathway databases
BioCyc	SROT640132:GHEU-2239-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR014293. RNA_pol_sigma70_actinobac. IPR000838. RNA_pol_sigma70_ECF_CS. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02947. SigH_actino. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS01063. SIGMA70_ECF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D6Z9Y0_SEGRD

Accession

Primary (citable) accession number: D6Z9Y0

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	May 29, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)