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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Tbis_2258

Organism
Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciTBIS469371:GHSI-2291-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Tbis_2258Imported
OrganismiThermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)Imported
Taxonomic identifieri469371 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeThermobispora
ProteomesiUP000006640: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiFHPWPVR.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

D6Y393-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASPYIELEA GARVIRLTNP DKIYFPGVGA TKRDLVEYYL SVGDGVLRAM
60 70 80 90 100
RDRPTYLKRH PDGVSSEAIY QKRLPRHPEW IETVTVRFPS GRTAAALCPT
110 120 130 140 150
EIAAIAWCVN LGTIDFHPWP VRKTDLDHPD ELRIDVDPQP GTTFEDARTA
160 170 180 190 200
AFAVRDLLAE LGMTGYPKTS GGRGLHISVR IRPRWTFTEV RHAAIAFARE
210 220 230 240 250
VERRMPELVT TAWWKEERGA KIFLDFNQNA RDRTIASAYS VRARPDALVS
260 270 280 290 300
APVTWDELAS CDPRDFDIRT MPRRFAERGD VHRAIDDEEF DIGVLLEWFA
310 320 330
ADGRGDLPYP PTHPKMPGEP KRVQPSRARD HG
Length:332
Mass (Da):37,623
Last modified:August 10, 2010 - v1
Checksum:i393EF666BD852B71
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001874 Genomic DNA. Translation: ADG88968.1.
RefSeqiYP_003652861.1. NC_014165.1.

Genome annotation databases

EnsemblBacteriaiADG88968; ADG88968; Tbis_2258.
GeneIDi9168760.
KEGGitbi:Tbis_2258.
PATRICi38287591. VBITheBis80272_2328.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001874 Genomic DNA. Translation: ADG88968.1.
RefSeqiYP_003652861.1. NC_014165.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG88968; ADG88968; Tbis_2258.
GeneIDi9168760.
KEGGitbi:Tbis_2258.
PATRICi38287591. VBITheBis80272_2328.

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiFHPWPVR.

Enzyme and pathway databases

BioCyciTBIS469371:GHSI-2291-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51Imported.

Entry informationi

Entry nameiD6Y393_THEBD
AccessioniPrimary (citable) accession number: D6Y393
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: February 4, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.