D6XQI2 (D6XQI2_HELPV) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADI35026.1
EC=5.1.1.1 EMBL ADI35026.1

Gene names

Name:	alr EMBL ADI35026.1
Ordered Locus Names:	HPV225_0962 EMBL ADI35026.1

Organism

Helicobacter pylori (strain v225d) [Complete proteome] [HAMAP] EMBL ADI35026.1

Taxonomic identifier

637913 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter › Helicobacter pylori

Protein attributes

Sequence length	377 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS011079
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079 EMBL ADI35026.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D6XQI2 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: E1B357975657ACB7	FASTA	377	41,898
	10 20 30 40 50 60 MLKRASFVEV NSASLRHNFS AVKSIVPKDA HIMAVVKANA YGVGAIKASE IFLQEGAHYL 70 80 90 100 110 120 GVATLDEALE LRSYFSKTPI LILGYSPNAN ASMLIDNDLS AMIFSLEQAE VFSQMALKSQ 130 140 150 160 170 180 KRLKIHLKID TGMHRLGLEP NFKSIEIIKK IRALKGLEVE GIFTHLSNAD AKIKTHAKNQ 190 200 210 220 230 240 MKAFNAFLEQ LLNQKIEFQY RHAYNSAGIL SLCNGNENRF LNLYRPGIML YGFYPSNGMK 250 260 270 280 290 300 ETCPTILKNV ISLKAQIVQI RSVKKGEFIG YGEHFYTNEE TLVGVLALGY ADGLMRALGN 310 320 330 340 350 360 RIQVAINNQL APLIGKVCMD QCFVKLNNIQ AKEGDEVILF GDKSAKANDA SEIAALLNTI 370 PYETISTLSK RLERVYI

References

[1]

"Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses." Mane S.P., Dominguez-Bello M.G., Blaser M.J., Sobral B.W., Hontecillas R., Skoneczka J., Mohapatra S.K., Crasta O.R., Evans C., Modise T., Shallom S., Shukla M., Varon C., Megraud F., Maldonado-Contreras A.L., Williams K.P., Bassaganya-Riera J. J. Bacteriol. 192:3078-3092(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: v225d.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001582 Genomic DNA. Translation: ADI35026.1.
RefSeq	YP_005763875.1. NC_017355.1.
3D structure databases
ProteinModelPortal	D6XQI2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADI35026; ADI35026; HPV225_0962.
GeneID	12342553.
KEGG	hpv:HPV225_0962.
PATRIC	43069536. VBIHelPyl5358_0956.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	NFKSIEI.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D6XQI2_HELPV

Accession

Primary (citable) accession number: D6XQI2

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)