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D6WBL2 (D6WBL2_TRICA) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length853 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
D6WBL2 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: 5C548E0015A89408

FASTA85397,112
        10         20         30         40         50         60 
MSDELVEKPF LVEVAKQGRA VCKKCKQKCA QGELRIAKLV ANPFGEGKMK NWHHVNCLFE 

        70         80         90        100        110        120 
VFLKQRPTTK RIDDPVEDID GWVLLDDEQK SDILKRVEEC NSFFETKHGV KPSPKKTPQE 

       130        140        150        160        170        180 
AKPSTSSKDS SGPVIQFDPS HKDNQFREFR RVVADISNVS SYLEKTSIVS KMFTKGSDGT 

       190        200        210        220        230        240 
GFKGDIVLWC RLLLPGFVKR IYNLQSKQLV KLFSKIFHCD QDAMLEHLEQ GDVSETIQVF 

       250        260        270        280        290        300 
YERSKSFKPV KKSTLTLQQV DEFLQDLTNL TKEEEQTAHL KTFASKCTAN DLKIVIRLIK 

       310        320        330        340        350        360 
HDLRMNAGAK HILDGVHPDA YQAFQSSRDI KAVIDRCLKD KGTKARIELM TPVLPMLAEA 

       370        380        390        400        410        420 
CKSVEQAMKK CPNGMYSEIK YDGERVQVHK QGSEFKYFSR SLKPVLPHKV AHFKNYIPQA 

       430        440        450        460        470        480 
FPHGTDLILD SEILMIDTQT GKPLPFGTLG IHKKSEFKDA SVCLFVFDCI YYNGDVLTDK 

       490        500        510        520        530        540 
PISFRKKILK ENMTEIPNHI VFSEMEEIHD PNDLTQMIAK VLKLGLEGLV LKDITSVYEP 

       550        560        570        580        590        600 
GKRHWLKVKK DYLFGGAMAD SADLIVLGAW YGTGKKGGIM SIFLMGCYDE ANDRFCTVSK 

       610        620        630        640        650        660 
VSTGHDDKTL EKLQTELDMV KISSDPAKVP DWLHCTKTMV PDFVARDPKK QPVWEITGAE 

       670        680        690        700        710        720 
FTKHEVHTAD GISIRFPRVT KIRDDKCWQS ATSLKELKVL FAKSKEHTDV SLLLQGTAES 

       730        740        750        760        770        780 
SPKKQKTLES FVKKRGSEDP QSSNSKKVKK EPKTVKIINP LPDYFHNIKV VLEDKVREKQ 

       790        800        810        820        830        840 
WDLIRYFIAY GGQICKHGES ENATHMIHLN SMVPEIDQCN PDVKHVTVDW IKNCVVNESV 

       850 
CDYRPFVVRW KPS 

« Hide

References

« Hide 'large scale' references
[1]"The genome of the model beetle and pest Tribolium castaneum."
Tribolium Genome Sequencing Consortium
Richards S., Gibbs R.A., Weinstock G.M., Brown S.J., Denell R., Beeman R.W., Gibbs R., Beeman R.W., Brown S.J., Bucher G., Friedrich M., Grimmelikhuijzen C.J., Klingler M., Lorenzen M., Richards S., Roth S., Schroder R., Tautz D. expand/collapse author list , Zdobnov E.M., Muzny D., Gibbs R.A., Weinstock G.M., Attaway T., Bell S., Buhay C.J., Chandrabose M.N., Chavez D., Clerk-Blankenburg K.P., Cree A., Dao M., Davis C., Chacko J., Dinh H., Dugan-Rocha S., Fowler G., Garner T.T., Garnes J., Gnirke A., Hawes A., Hernandez J., Hines S., Holder M., Hume J., Jhangiani S.N., Joshi V., Khan Z.M., Jackson L., Kovar C., Kowis A., Lee S., Lewis L.R., Margolis J., Morgan M., Nazareth L.V., Nguyen N., Okwuonu G., Parker D., Richards S., Ruiz S.J., Santibanez J., Savard J., Scherer S.E., Schneider B., Sodergren E., Tautz D., Vattahil S., Villasana D., White C.S., Wright R., Park Y., Beeman R.W., Lord J., Oppert B., Lorenzen M., Brown S., Wang L., Savard J., Tautz D., Richards S., Weinstock G., Gibbs R.A., Liu Y., Worley K., Weinstock G., Elsik C.G., Reese J.T., Elhaik E., Landan G., Graur D., Arensburger P., Atkinson P., Beeman R.W., Beidler J., Brown S.J., Demuth J.P., Drury D.W., Du Y.Z., Fujiwara H., Lorenzen M., Maselli V., Osanai M., Park Y., Robertson H.M., Tu Z., Wang J.J., Wang S., Richards S., Song H., Zhang L., Sodergren E., Werner D., Stanke M., Morgenstern B., Solovyev V., Kosarev P., Brown G., Chen H.C., Ermolaeva O., Hlavina W., Kapustin Y., Kiryutin B., Kitts P., Maglott D., Pruitt K., Sapojnikov V., Souvorov A., Mackey A.J., Waterhouse R.M., Wyder S., Zdobnov E.M., Zdobnov E.M., Wyder S., Kriventseva E.V., Kadowaki T., Bork P., Aranda M., Bao R., Beermann A., Berns N., Bolognesi R., Bonneton F., Bopp D., Brown S.J., Bucher G., Butts T., Chaumot A., Denell R.E., Ferrier D.E., Friedrich M., Gordon C.M., Jindra M., Klingler M., Lan Q., Lattorff H.M., Laudet V., von Levetsow C., Liu Z., Lutz R., Lynch J.A., da Fonseca R.N., Posnien N., Reuter R., Roth S., Savard J., Schinko J.B., Schmitt C., Schoppmeier M., Schroder R., Shippy T.D., Simonnet F., Marques-Souza H., Tautz D., Tomoyasu Y., Trauner J., Van der Zee M., Vervoort M., Wittkopp N., Wimmer E.A., Yang X., Jones A.K., Sattelle D.B., Ebert P.R., Nelson D., Scott J.G., Beeman R.W., Muthukrishnan S., Kramer K.J., Arakane Y., Beeman R.W., Zhu Q., Hogenkamp D., Dixit R., Oppert B., Jiang H., Zou Z., Marshall J., Elpidina E., Vinokurov K., Oppert C., Zou Z., Evans J., Lu Z., Zhao P., Sumathipala N., Altincicek B., Vilcinskas A., Williams M., Hultmark D., Hetru C., Jiang H., Grimmelikhuijzen C.J., Hauser F., Cazzamali G., Williamson M., Park Y., Li B., Tanaka Y., Predel R., Neupert S., Schachtner J., Verleyen P., Raible F., Bork P., Friedrich M., Walden K.K., Robertson H.M., Angeli S., Foret S., Bucher G., Schuetz S., Maleszka R., Wimmer E.A., Beeman R.W., Lorenzen M., Tomoyasu Y., Miller S.C., Grossmann D., Bucher G.
Nature 452:949-955(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Georgia GA2 EMBL EEZ99344.1.
[2]"BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum."
Kim H.S., Murphy T., Xia J., Caragea D., Park Y., Beeman R.W., Lorenzen M.D., Butcher S., Manak J.R., Brown S.J.
Nucleic Acids Res. 38:D437-D442(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: Georgia GA2 EMBL EEZ99344.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000277 Genomic DNA. Translation: EEZ99344.1.
RefSeqXP_967954.1. XM_962861.1.

3D structure databases

ProteinModelPortalD6WBL2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaTCOGS2:TC004862-RA; TCOGS2:TC004862-PA; TCOGS2:TC004862.
GeneID656322.
KEGGtca:656322.

Phylogenomic databases

KOK10776.
OMALFSEMKH.
OrthoDBEOG7BKCT2.
PhylomeDBD6WBL2.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.30.1740.10. 1 hit.
3.40.50.10190. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
IPR001510. Znf_PARP.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF00645. zf-PARP. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 1 hit.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS50064. PARP_ZN_FINGER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD6WBL2_TRICA
AccessionPrimary (citable) accession number: D6WBL2
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: November 13, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)