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Protein
Submitted name:

Complement C1q subcomponent subunit B

Gene

C1QB

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Complement C1q subcomponent subunit BImported
Gene namesi
Name:C1QBImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:1242. C1QB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence analysisAdd
BLAST
Chaini26 – 153128Sequence analysisPRO_5003087788Add
BLAST

Proteomic databases

PaxDbiD6RGJ1.
PeptideAtlasiD6RGJ1.

Expressioni

Gene expression databases

BgeeiENSG00000173369.
ExpressionAtlasiD6RGJ1. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000313967.

Structurei

3D structure databases

ProteinModelPortaliD6RGJ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini115 – 15339C1qInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IWVM. Eukaryota.
ENOG4111MQB. LUCA.
GeneTreeiENSGT00760000118830.
HOGENOMiHOG000085653.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiIPR001073. C1q_dom.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamiPF01391. Collagen. 1 hit.
[Graphical view]
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiPS50871. C1Q. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D6RGJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIPWGSIPV LMLLLLLGLI DISQAQLSCT GPPAIPGIPG IPGTPGPDGQ
60 70 80 90 100
PGTPGIKGEK GLPGLAGDHG EFGEKGDPGI PGNPGKVGPK GPMGPKGGPG
110 120 130 140 150
APGAPGPKGE SGDYKATQKI AFSATRTINV PLRRDQTIRF DHVITNMNNN

YEP
Length:153
Mass (Da):15,525
Last modified:July 13, 2010 - v1
Checksum:i3D497DAF4F7C49AF
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei153 – 1531Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL158086 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000510260; ENSP00000426317; ENSG00000173369.
UCSCiuc057ddz.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL158086 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliD6RGJ1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000313967.

Proteomic databases

PaxDbiD6RGJ1.
PeptideAtlasiD6RGJ1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000510260; ENSP00000426317; ENSG00000173369.
UCSCiuc057ddz.1. human.

Organism-specific databases

HGNCiHGNC:1242. C1QB.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IWVM. Eukaryota.
ENOG4111MQB. LUCA.
GeneTreeiENSGT00760000118830.
HOGENOMiHOG000085653.

Miscellaneous databases

ChiTaRSiC1QB. human.

Gene expression databases

BgeeiENSG00000173369.
ExpressionAtlasiD6RGJ1. baseline and differential.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiIPR001073. C1q_dom.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamiPF01391. Collagen. 1 hit.
[Graphical view]
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiPS50871. C1Q. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD6RGJ1_HUMAN
AccessioniPrimary (citable) accession number: D6RGJ1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: September 7, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.