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D6D732 (D6D732_9BACE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1031 By similarity HAMAP-Rule MF_00455
Active site1061 By similarity HAMAP-Rule MF_00455
Metal binding2341Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2731Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2981Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3091Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3111Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3411Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
D6D732 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 21E82BA66651997B

FASTA43848,891
        10         20         30         40         50         60 
MATKEFFPGI EKIKFEGKDS KNPMAFRYYD AEKVINGKKM KDWLRFAMAW WHTLCAEGGD 

        70         80         90        100        110        120 
QFGGGTKQFP WNSNADAIQA AKDKMDAGFE FMQKMGIEYY CFHDVDLVSE GASIEEYEAN 

       130        140        150        160        170        180 
LKAIVAYAKQ KQAETGIKLL WGTANVFGHA RYMNGAATNP DFDVVARAAV QIKNAIDATI 

       190        200        210        220        230        240 
ELGGQNYVFW GGREGYMSLL NTDQKREKEH LAKMLTIARD YARARGFKGT FLIEPKPMEP 

       250        260        270        280        290        300 
TKHQYDVDTE TVIGFLKAHG LDKDFKVNIE VNHATLAGHT FEHELAVAVD NGMLGSIDAN 

       310        320        330        340        350        360 
RGDYQNGWDT DQFPIDNYEL TQAMMQIIRN GGLGNGGTNF DAKTRRNSTD LEDIFIAHIA 

       370        380        390        400        410        420 
GMDAMARALE SAAALLNESP YKKMLADRYA SFDGGKGKEF EDGKLTLEDV VAYAKANGEP 

       430 
KQTSGKQELY EAILNMYC 

« Hide

References

[1]"The genome sequence of Bacteriodes xylanisolvens XB1A."
metaHIT consortium -- http://www.metahit.eu/
Pajon A., Turner K., Parkhill J., Bernalier A.
Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: XB1A EMBL CBK65827.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP929033 Genomic DNA. Translation: CBK65827.1.
RefSeqYP_007791408.1. NC_021017.1.

3D structure databases

ProteinModelPortalD6D732.
SMRD6D732. Positions 4-438.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBK65827; CBK65827; BXY_06060.
GeneID15191066.
KEGGbxy:BXY_06060.
PATRIC42753683. VBIBacXyl109951_4168.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD6D732_9BACE
AccessionPrimary (citable) accession number: D6D732
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 11, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)