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D5XFI6

- D5XFI6_THEPJ

UniProt

D5XFI6 - D5XFI6_THEPJ

Protein
Submitted name:

ATP dependent DNA ligase

Gene

TherJR_1554

Organism
Thermincola potens (strain JR)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTPOT635013:GHIM-1595-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:TherJR_1554Imported
    OrganismiThermincola potens (strain JR)Imported
    Taxonomic identifieri635013 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeThermincola
    ProteomesiUP000002377: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD5XFI6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5XFI6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MELTPVVPFE PVSAVQIPHG EQWIAQVKWD GVRVLTYYDG HSVRLYNRRQ    50
    HERTVQFPEF VEIRRFCTAS SIILDGEIIA FRRGKPSFYE VMKRDGIRQP 100
    EKVGHVRKAI PLVYMIFDVL YFNGEWIIGR TLEERQEILN RCIVPQEDVQ 150
    LVENFREAEI LFDVIKAQGL EGIVCKDISS RYTIKGKDGR WRKLKNYRDL 200
    VAVIGGATYR GNIINAVLLG LYDRDGQLWY IGHAGTGKLT RAEWRDLTER 250
    IKPLVSGECP FVNKPARVKN VTWVKPELTA KIRYIEWTEG HTLRQPSIQA 300
    FVEIPPAQCI FEQS 314
    Length:314
    Mass (Da):36,401
    Last modified:July 13, 2010 - v1
    Checksum:i6C5AA8FA353FFA94
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002028 Genomic DNA. Translation: ADG82407.1.
    RefSeqiYP_003640308.1. NC_014152.1.

    Genome annotation databases

    EnsemblBacteriaiADG82407; ADG82407; TherJR_1554.
    GeneIDi9149242.
    KEGGitjr:TherJR_1554.
    PATRICi38274729. VBITheSp141296_1662.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002028 Genomic DNA. Translation: ADG82407.1 .
    RefSeqi YP_003640308.1. NC_014152.1.

    3D structure databases

    ProteinModelPortali D5XFI6.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG82407 ; ADG82407 ; TherJR_1554 .
    GeneIDi 9149242.
    KEGGi tjr:TherJR_1554.
    PATRICi 38274729. VBITheSp141296_1662.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci TPOT635013:GHIM-1595-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Thermincola sp. JR."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Woyke T.
      Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JRImported.

    Entry informationi

    Entry nameiD5XFI6_THEPJ
    AccessioniPrimary (citable) accession number: D5XFI6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3