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D5XFI6

- D5XFI6_THEPJ

UniProt

D5XFI6 - D5XFI6_THEPJ

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Protein
Submitted name: ATP dependent DNA ligase
Gene
TherJR_1554
Organism
Thermincola potens (strain JR)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTPOT635013:GHIM-1595-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TherJR_1554Imported
OrganismiThermincola potens (strain JR)Imported
Taxonomic identifieri635013 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeThermincola
ProteomesiUP000002377: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD5XFI6.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5XFI6-1 [UniParc]FASTAAdd to Basket

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MELTPVVPFE PVSAVQIPHG EQWIAQVKWD GVRVLTYYDG HSVRLYNRRQ    50
HERTVQFPEF VEIRRFCTAS SIILDGEIIA FRRGKPSFYE VMKRDGIRQP 100
EKVGHVRKAI PLVYMIFDVL YFNGEWIIGR TLEERQEILN RCIVPQEDVQ 150
LVENFREAEI LFDVIKAQGL EGIVCKDISS RYTIKGKDGR WRKLKNYRDL 200
VAVIGGATYR GNIINAVLLG LYDRDGQLWY IGHAGTGKLT RAEWRDLTER 250
IKPLVSGECP FVNKPARVKN VTWVKPELTA KIRYIEWTEG HTLRQPSIQA 300
FVEIPPAQCI FEQS 314
Length:314
Mass (Da):36,401
Last modified:July 13, 2010 - v1
Checksum:i6C5AA8FA353FFA94
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002028 Genomic DNA. Translation: ADG82407.1.
RefSeqiYP_003640308.1. NC_014152.1.

Genome annotation databases

EnsemblBacteriaiADG82407; ADG82407; TherJR_1554.
GeneIDi9149242.
KEGGitjr:TherJR_1554.
PATRICi38274729. VBITheSp141296_1662.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002028 Genomic DNA. Translation: ADG82407.1 .
RefSeqi YP_003640308.1. NC_014152.1.

3D structure databases

ProteinModelPortali D5XFI6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG82407 ; ADG82407 ; TherJR_1554 .
GeneIDi 9149242.
KEGGi tjr:TherJR_1554.
PATRICi 38274729. VBITheSp141296_1662.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.

Enzyme and pathway databases

BioCyci TPOT635013:GHIM-1595-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Thermincola sp. JR."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Woyke T.
    Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JRImported.

Entry informationi

Entry nameiD5XFI6_THEPJ
AccessioniPrimary (citable) accession number: D5XFI6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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