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D5XFI6 (D5XFI6_THEPJ) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:TherJR_1554 EMBL ADG82407.1
OrganismThermincola potens (strain JR) [Complete proteome] [HAMAP] EMBL ADG82407.1
Taxonomic identifier635013 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeThermincola

Protein attributes

Sequence length314 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D5XFI6 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 6C5AA8FA353FFA94

FASTA31436,401
        10         20         30         40         50         60 
MELTPVVPFE PVSAVQIPHG EQWIAQVKWD GVRVLTYYDG HSVRLYNRRQ HERTVQFPEF 

        70         80         90        100        110        120 
VEIRRFCTAS SIILDGEIIA FRRGKPSFYE VMKRDGIRQP EKVGHVRKAI PLVYMIFDVL 

       130        140        150        160        170        180 
YFNGEWIIGR TLEERQEILN RCIVPQEDVQ LVENFREAEI LFDVIKAQGL EGIVCKDISS 

       190        200        210        220        230        240 
RYTIKGKDGR WRKLKNYRDL VAVIGGATYR GNIINAVLLG LYDRDGQLWY IGHAGTGKLT 

       250        260        270        280        290        300 
RAEWRDLTER IKPLVSGECP FVNKPARVKN VTWVKPELTA KIRYIEWTEG HTLRQPSIQA 

       310 
FVEIPPAQCI FEQS 

« Hide

References

[1]"Complete sequence of Thermincola sp. JR."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Woyke T.
Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JR EMBL ADG82407.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002028 Genomic DNA. Translation: ADG82407.1.
RefSeqYP_003640308.1. NC_014152.1.

3D structure databases

ProteinModelPortalD5XFI6.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG82407; ADG82407; TherJR_1554.
GeneID9149242.
KEGGtjr:TherJR_1554.
PATRIC38274729. VBITheSp141296_1662.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycTPOT635013:GHIM-1595-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5XFI6_THEPJ
AccessionPrimary (citable) accession number: D5XFI6
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)