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Protein
Submitted name:

ATP dependent DNA ligase

Gene

TherJR_1554

Organism
Thermincola potens (strain JR)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTPOT635013:GHIM-1595-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TherJR_1554Imported
OrganismiThermincola potens (strain JR)Imported
Taxonomic identifieri635013 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeThermincola
ProteomesiUP000002377: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD5XFI6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5XFI6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MELTPVVPFE PVSAVQIPHG EQWIAQVKWD GVRVLTYYDG HSVRLYNRRQ
60 70 80 90 100
HERTVQFPEF VEIRRFCTAS SIILDGEIIA FRRGKPSFYE VMKRDGIRQP
110 120 130 140 150
EKVGHVRKAI PLVYMIFDVL YFNGEWIIGR TLEERQEILN RCIVPQEDVQ
160 170 180 190 200
LVENFREAEI LFDVIKAQGL EGIVCKDISS RYTIKGKDGR WRKLKNYRDL
210 220 230 240 250
VAVIGGATYR GNIINAVLLG LYDRDGQLWY IGHAGTGKLT RAEWRDLTER
260 270 280 290 300
IKPLVSGECP FVNKPARVKN VTWVKPELTA KIRYIEWTEG HTLRQPSIQA
310
FVEIPPAQCI FEQS
Length:314
Mass (Da):36,401
Last modified:July 13, 2010 - v1
Checksum:i6C5AA8FA353FFA94
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002028 Genomic DNA. Translation: ADG82407.1.
RefSeqiYP_003640308.1. NC_014152.1.

Genome annotation databases

EnsemblBacteriaiADG82407; ADG82407; TherJR_1554.
GeneIDi9149242.
KEGGitjr:TherJR_1554.
PATRICi38274729. VBITheSp141296_1662.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002028 Genomic DNA. Translation: ADG82407.1.
RefSeqiYP_003640308.1. NC_014152.1.

3D structure databases

ProteinModelPortaliD5XFI6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG82407; ADG82407; TherJR_1554.
GeneIDi9149242.
KEGGitjr:TherJR_1554.
PATRICi38274729. VBITheSp141296_1662.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Enzyme and pathway databases

BioCyciTPOT635013:GHIM-1595-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Thermincola sp. JR."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Woyke T.
    Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JRImported.

Entry informationi

Entry nameiD5XFI6_THEPJ
AccessioniPrimary (citable) accession number: D5XFI6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: January 7, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.