D5X617 (D5X617_THIK1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cytochrome c oxidase, subunit I EMBL ADG31934.1

Gene names

Ordered Locus Names:

Tint_2593

Organism

Thiomonas intermedia (strain K12) (Thiobacillus intermedius) [Complete proteome] [HAMAP]

Taxonomic identifier

75379 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Thiomonas › Thiomonas intermedia

Protein attributes

Sequence length	543 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the heme-copper respiratory oxidase family. RuleBase RU000370

Ontologies

Keywords
Biological process	Electron transport Respiratory chain RuleBase RU000370 Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU000370
Ligand	Heme RuleBase RU000370 Iron Metal-binding
Molecular function	Oxidoreductase RuleBase RU000370
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	aerobic respiration Inferred from electronic annotation. Source: InterPro electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: InterPro respiratory chain Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	copper ion binding Inferred from electronic annotation. Source: InterPro cytochrome-c oxidase activity Inferred from electronic annotation. Source: InterPro electron carrier activity Inferred from electronic annotation. Source: InterPro heme binding Inferred from electronic annotation. Source: InterPro iron ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5X617 [UniParc]. Last modified July 13, 2010. Version 1. Checksum: CDA1D80BE9250889	FASTA	543	60,585
	10 20 30 40 50 60 MSAVIDHAPP SAHAGDHAHE HPHGWRRWLM STNHKDIGTM YLLFALWMLF EGGILALAIR 70 80 90 100 110 120 TELWKPYVWL LNPELFNAFG TMHGIMMIFG SVMPALVGFA NWMIPLQIGA PDMAFPRLNN 130 140 150 160 170 180 LSFWLLIPAG ILLTASFFVP GGAPGVGWTL YAPLTLQQGM GMDLVIFAIH LMGASSIMGS 190 200 210 220 230 240 INIIVTILNL RAPGMTLMKM PLFVWTWLIT AYLLLAIMPV LAGAVTMTLT DRHFGTSFFS 250 260 270 280 290 300 ATGGGDPVLY QHLFWFFGHP EVYVMILPVF GIVSSVIPAF ARKRLFGYSS MVYASASIAI 310 320 330 340 350 360 LSFLVWAHHM FTAGMPTTGQ LFFMYATMLI AVPTGVKVFN WVATMWRGSM TFETPMLFAV 370 380 390 400 410 420 GFIFVFTLGG FTGLMLAMVP IDTQVHNTYF VIAHFHYVLV AGSLFGIFMG FYYWSPKWTG 430 440 450 460 470 480 VMYNETAGKI HFWTSMISFN IAFFPQHFLG LAGMPRRYVA YPVQFTDFNQ ISTIGAWLFG 490 500 510 520 530 540 LSQAYFLFAV VIPVLRGKGE KAPQRPWEGA EGLEWEVPSP APFHTYETPP KLNADATRVL GYN

References

[1]

"Complete sequence of Thiomonas intermedia K12." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Kerfeld C.A., Cannon G.C., Heinhorst S., Woyke T. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 EMBL ADG31934.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002021 Genomic DNA. Translation: ADG31934.1.
RefSeq	YP_003644264.1. NC_014153.1.
3D structure databases
ProteinModelPortal	D5X617.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG31934; ADG31934; Tint_2593.
GeneID	9153327.
KEGG	tin:Tint_2593.
PATRIC	38295749. VBIThiInt85915_2616.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000085274.
KO	K02274.
Family and domain databases
Gene3D	1.20.210.10. 1 hit.
InterPro	IPR000883. Cyt_c_Oxase_su1. IPR023615. Cyt_c_Oxase_su1_BS. IPR023616. Cyt_c_Oxase_su1_dom. IPR014241. Cyt_c_oxidase_su1_bac. [Graphical view]
PANTHER	PTHR10422. PTHR10422. 1 hit.
Pfam	PF00115. COX1. 1 hit. [Graphical view]
PRINTS	PR01165. CYCOXIDASEI.
SUPFAM	SSF81442. COX1. 1 hit.
TIGRFAMs	TIGR02891. CtaD_CoxA. 1 hit.
PROSITE	PS50855. COX1. 1 hit. PS00077. COX1_CUB. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5X617_THIK1

Accession

Primary (citable) accession number: D5X617

Entry history

Integrated into UniProtKB/TrEMBL:	July 13, 2010
Last sequence update:	July 13, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)