D5WZX7 (D5WZX7_THIK1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Nickel-dependent hydrogenase large subunit EMBL ADG32405.1

Gene names

Ordered Locus Names:

Tint_3076

Organism

Thiomonas intermedia (strain K12) (Thiobacillus intermedius) [Complete proteome] [HAMAP]

Taxonomic identifier

75379 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Thiomonas › Thiomonas intermedia

Protein attributes

Sequence length	605 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. RuleBase RU003896

Ontologies

Keywords
Ligand	Metal-binding RuleBase RU003896 Nickel RuleBase RU003896
Molecular function	Oxidoreductase RuleBase RU003896
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ferredoxin hydrogenase activity Inferred from electronic annotation. Source: InterPro nickel cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5WZX7 [UniParc]. Last modified July 13, 2010. Version 1. Checksum: 1CACE17F7F07CDB5	FASTA	605	67,295
	10 20 30 40 50 60 MSTVTTPNGF TLDTSGRRVV VDPVTRIEGH MRCEVNVDKD NIIRNAVSTG TMWRGLEVIV 70 80 90 100 110 120 KGRDPRDVWA FVERICGVCT GCHALASVRA VEDALNIRIP KNAYLIREMM AKTLQVHDHV 130 140 150 160 170 180 VHFYHLHALD WVNPINALKA DPKATSTLQQ TVSPNHPQSS PGYFRDVQSR IKKFVDSGQL 190 200 210 220 230 240 GPFKNGYWSN PAYKLSPEAD LMGVTHYLEA LDMQREFVKV HTIFGGKNPH PNYLVGGVPC 250 260 270 280 290 300 AINMDGDLAA GAPLNMERLN FVRARIQEMV DFCHNVYVPD VIAIASFYKD WLYGGGLGAK 310 320 330 340 350 360 SVMDYGDYAK VQGDKSTDQM PGGVILNGNW NEVFEVDPRD PEQVQEFVSH SWYTYPGQEN 370 380 390 400 410 420 KGLHPWDGVT EPKFELGPNT KGSKTNIQEI DESAKYSWIK APRWKGHAVE VGPLSRYTIA 430 440 450 460 470 480 YAKNLPHQRE QVDRSVAFFN QLAGTSVDPK TALQTTIGRT LARALEAEYC ADMMVDDWND 490 500 510 520 530 540 LIANIKAGDS STANMEKWDP STWPKEAKGV ATVAAPRGAL GHWIRIKDGR VENYQAVVPT 550 560 570 580 590 600 TWNGSPRDPA GNIGAFEASL MNTKMERPDE PVEILRTLHS FDPCLACSTH VMGEDGGELT RVTVR

References

[1]

"Complete sequence of Thiomonas intermedia K12." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Kerfeld C.A., Cannon G.C., Heinhorst S., Woyke T. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 EMBL ADG32405.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002021 Genomic DNA. Translation: ADG32405.1.
RefSeq	YP_003644735.1. NC_014153.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG32405; ADG32405; Tint_3076.
GeneID	9153813.
KEGG	tin:Tint_3076.
PATRIC	38296749. VBIThiInt85915_3107.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000278799.
KO	K06281.
Family and domain databases
InterPro	IPR001501. Ni-dep_hyd_lsu. IPR018194. Ni-dep_hyd_lsu_Ni_BS. [Graphical view]
Pfam	PF00374. NiFeSe_Hases. 1 hit. [Graphical view]
PROSITE	PS00507. NI_HGENASE_L_1. 1 hit. PS00508. NI_HGENASE_L_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5WZX7_THIK1

Accession

Primary (citable) accession number: D5WZX7

Entry history

Integrated into UniProtKB/TrEMBL:	July 13, 2010
Last sequence update:	July 13, 2010
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)