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D5WHH3

- D5WHH3_BURSC

UniProt

D5WHH3 - D5WHH3_BURSC

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
BC1002_3906
Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-3985-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:BC1002_3906Imported
OrganismiBurkholderia sp. (strain CCGE1002)Imported
Taxonomic identifieri640511 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002190: Chromosome 2

Structurei

3D structure databases

ProteinModelPortaliD5WHH3.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5WHH3-1 [UniParc]FASTAAdd to Basket

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MKRFAALYTA LDATTSTHDK LAALTSYFSA AEPEDAAWAS YFLAGGKPRQ    50
LVPTRLLTDI ARERAGLPEW LFEESYHAVG DLAETIAHIL PPASRDSELG 100
LTQWIEQRML PLRGLPPDEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG 150
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPQTDD 200
DTQAHAPEHD SDLGLPYPFF LAHPLQTDPA TLGDPGHWLI EWKWDGIRAQ 250
LVKRGGRVWL WSRGEDLITD RFPEVAALGE SLPDGYVIDG EILAWEPGAA 300
TPLPFARLQP RIARKTLTRK ILADSPAALL AYDLLEANGQ DLRMSPLADR 350
RARLDALSAS VEGTLARGLL RVSPLVSGAD WSALAALREE SRARGVEGLM 400
LKERESMYGV GRTKASGTWW KWKIEPYAVD AVLVYAQRGH GRRASLYTDY 450
TFAVWDEADG VRTLVPFAKA YSGLTDEEMH RVDAIVRKTT VDKFGPVRSV 500
TPTLVFEIGF EGIQASSRHK SGVAVRFPRM LRWRTDKHID DADTLAMLKG 550
FIDNRAG 557
Length:557
Mass (Da):62,050
Last modified:July 13, 2010 - v1
Checksum:i731AB59967F07816
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002014 Genomic DNA. Translation: ADG17918.1.
RefSeqiWP_013091719.1. NC_014118.1.
YP_003607429.1. NC_014118.1.

Genome annotation databases

EnsemblBacteriaiADG17918; ADG17918; BC1002_3906.
GeneIDi9113219.
KEGGibge:BC1002_3906.
PATRICi37216922. VBIBurSp41388_4006.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002014 Genomic DNA. Translation: ADG17918.1 .
RefSeqi WP_013091719.1. NC_014118.1.
YP_003607429.1. NC_014118.1.

3D structure databases

ProteinModelPortali D5WHH3.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG17918 ; ADG17918 ; BC1002_3906 .
GeneIDi 9113219.
KEGGi bge:BC1002_3906.
PATRICi 37216922. VBIBurSp41388_4006.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.

Enzyme and pathway databases

BioCyci BSP640511:GJ7J-3985-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia sp. CCGE1002."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCGE1002.

Entry informationi

Entry nameiD5WHH3_BURSC
AccessioniPrimary (citable) accession number: D5WHH3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: September 3, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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