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D5WHH3

- D5WHH3_BURSC

UniProt

D5WHH3 - D5WHH3_BURSC

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

BC1002_3906

Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-3985-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:BC1002_3906Imported
OrganismiBurkholderia sp. (strain CCGE1002)Imported
Taxonomic identifieri640511 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002190: Chromosome 2

Structurei

3D structure databases

ProteinModelPortaliD5WHH3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5WHH3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRFAALYTA LDATTSTHDK LAALTSYFSA AEPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
LVPTRLLTDI ARERAGLPEW LFEESYHAVG DLAETIAHIL PPASRDSELG
110 120 130 140 150
LTQWIEQRML PLRGLPPDEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG
160 170 180 190 200
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPQTDD
210 220 230 240 250
DTQAHAPEHD SDLGLPYPFF LAHPLQTDPA TLGDPGHWLI EWKWDGIRAQ
260 270 280 290 300
LVKRGGRVWL WSRGEDLITD RFPEVAALGE SLPDGYVIDG EILAWEPGAA
310 320 330 340 350
TPLPFARLQP RIARKTLTRK ILADSPAALL AYDLLEANGQ DLRMSPLADR
360 370 380 390 400
RARLDALSAS VEGTLARGLL RVSPLVSGAD WSALAALREE SRARGVEGLM
410 420 430 440 450
LKERESMYGV GRTKASGTWW KWKIEPYAVD AVLVYAQRGH GRRASLYTDY
460 470 480 490 500
TFAVWDEADG VRTLVPFAKA YSGLTDEEMH RVDAIVRKTT VDKFGPVRSV
510 520 530 540 550
TPTLVFEIGF EGIQASSRHK SGVAVRFPRM LRWRTDKHID DADTLAMLKG

FIDNRAG
Length:557
Mass (Da):62,050
Last modified:July 13, 2010 - v1
Checksum:i731AB59967F07816
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002014 Genomic DNA. Translation: ADG17918.1.
RefSeqiWP_013091719.1. NC_014118.1.
YP_003607429.1. NC_014118.1.

Genome annotation databases

EnsemblBacteriaiADG17918; ADG17918; BC1002_3906.
GeneIDi9113219.
KEGGibge:BC1002_3906.
PATRICi37216922. VBIBurSp41388_4006.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002014 Genomic DNA. Translation: ADG17918.1 .
RefSeqi WP_013091719.1. NC_014118.1.
YP_003607429.1. NC_014118.1.

3D structure databases

ProteinModelPortali D5WHH3.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG17918 ; ADG17918 ; BC1002_3906 .
GeneIDi 9113219.
KEGGi bge:BC1002_3906.
PATRICi 37216922. VBIBurSp41388_4006.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.

Enzyme and pathway databases

BioCyci BSP640511:GJ7J-3985-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia sp. CCGE1002."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCGE1002Imported.

Entry informationi

Entry nameiD5WHH3_BURSC
AccessioniPrimary (citable) accession number: D5WHH3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: October 29, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3