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D5WHH3 (D5WHH3_BURSC) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:BC1002_3906 EMBL ADG17918.1
OrganismBurkholderia sp. (strain CCGE1002) [Complete proteome] [HAMAP] EMBL ADG17918.1
Taxonomic identifier640511 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length557 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D5WHH3 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 731AB59967F07816

FASTA55762,050
        10         20         30         40         50         60 
MKRFAALYTA LDATTSTHDK LAALTSYFSA AEPEDAAWAS YFLAGGKPRQ LVPTRLLTDI 

        70         80         90        100        110        120 
ARERAGLPEW LFEESYHAVG DLAETIAHIL PPASRDSELG LTQWIEQRML PLRGLPPDEL 

       130        140        150        160        170        180 
RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG VARQLVVRAL AEVAGVDHKR IAQRMVGWTD 

       190        200        210        220        230        240 
SQQKPDAARY LRLIAPQTDD DTQAHAPEHD SDLGLPYPFF LAHPLQTDPA TLGDPGHWLI 

       250        260        270        280        290        300 
EWKWDGIRAQ LVKRGGRVWL WSRGEDLITD RFPEVAALGE SLPDGYVIDG EILAWEPGAA 

       310        320        330        340        350        360 
TPLPFARLQP RIARKTLTRK ILADSPAALL AYDLLEANGQ DLRMSPLADR RARLDALSAS 

       370        380        390        400        410        420 
VEGTLARGLL RVSPLVSGAD WSALAALREE SRARGVEGLM LKERESMYGV GRTKASGTWW 

       430        440        450        460        470        480 
KWKIEPYAVD AVLVYAQRGH GRRASLYTDY TFAVWDEADG VRTLVPFAKA YSGLTDEEMH 

       490        500        510        520        530        540 
RVDAIVRKTT VDKFGPVRSV TPTLVFEIGF EGIQASSRHK SGVAVRFPRM LRWRTDKHID 

       550 
DADTLAMLKG FIDNRAG 

« Hide

References

[1]"Complete sequence of chromosome 2 of Burkholderia sp. CCGE1002."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCGE1002.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002014 Genomic DNA. Translation: ADG17918.1.
RefSeqYP_003607429.1. NC_014118.1.

3D structure databases

ProteinModelPortalD5WHH3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG17918; ADG17918; BC1002_3906.
GeneID9113219.
KEGGbge:BC1002_3906.
PATRIC37216922. VBIBurSp41388_4006.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.

Enzyme and pathway databases

BioCycBSP640511:GJ7J-3985-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5WHH3_BURSC
AccessionPrimary (citable) accession number: D5WHH3
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: November 13, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)