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D5WHH3

- D5WHH3_BURSC

UniProt

D5WHH3 - D5WHH3_BURSC

Protein
Submitted name:

ATP dependent DNA ligase

Gene

BC1002_3906

Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSP640511:GJ7J-3985-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:BC1002_3906Imported
    OrganismiBurkholderia sp. (strain CCGE1002)Imported
    Taxonomic identifieri640511 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000002190: Chromosome 2

    Structurei

    3D structure databases

    ProteinModelPortaliD5WHH3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5WHH3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKRFAALYTA LDATTSTHDK LAALTSYFSA AEPEDAAWAS YFLAGGKPRQ    50
    LVPTRLLTDI ARERAGLPEW LFEESYHAVG DLAETIAHIL PPASRDSELG 100
    LTQWIEQRML PLRGLPPDEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG 150
    VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPQTDD 200
    DTQAHAPEHD SDLGLPYPFF LAHPLQTDPA TLGDPGHWLI EWKWDGIRAQ 250
    LVKRGGRVWL WSRGEDLITD RFPEVAALGE SLPDGYVIDG EILAWEPGAA 300
    TPLPFARLQP RIARKTLTRK ILADSPAALL AYDLLEANGQ DLRMSPLADR 350
    RARLDALSAS VEGTLARGLL RVSPLVSGAD WSALAALREE SRARGVEGLM 400
    LKERESMYGV GRTKASGTWW KWKIEPYAVD AVLVYAQRGH GRRASLYTDY 450
    TFAVWDEADG VRTLVPFAKA YSGLTDEEMH RVDAIVRKTT VDKFGPVRSV 500
    TPTLVFEIGF EGIQASSRHK SGVAVRFPRM LRWRTDKHID DADTLAMLKG 550
    FIDNRAG 557
    Length:557
    Mass (Da):62,050
    Last modified:July 13, 2010 - v1
    Checksum:i731AB59967F07816
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002014 Genomic DNA. Translation: ADG17918.1.
    RefSeqiWP_013091719.1. NC_014118.1.
    YP_003607429.1. NC_014118.1.

    Genome annotation databases

    EnsemblBacteriaiADG17918; ADG17918; BC1002_3906.
    GeneIDi9113219.
    KEGGibge:BC1002_3906.
    PATRICi37216922. VBIBurSp41388_4006.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002014 Genomic DNA. Translation: ADG17918.1 .
    RefSeqi WP_013091719.1. NC_014118.1.
    YP_003607429.1. NC_014118.1.

    3D structure databases

    ProteinModelPortali D5WHH3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG17918 ; ADG17918 ; BC1002_3906 .
    GeneIDi 9113219.
    KEGGi bge:BC1002_3906.
    PATRICi 37216922. VBIBurSp41388_4006.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci BSP640511:GJ7J-3985-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 2 of Burkholderia sp. CCGE1002."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCGE1002Imported.

    Entry informationi

    Entry nameiD5WHH3_BURSC
    AccessioniPrimary (citable) accession number: D5WHH3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3