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Protein
Submitted name:

ATP dependent DNA ligase

Gene

BC1002_3906

Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-3985-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:BC1002_3906Imported
OrganismiBurkholderia sp. (strain CCGE1002)Imported
Taxonomic identifieri640511 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002190 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi640511.BC1002_3906.

Structurei

3D structure databases

ProteinModelPortaliD5WHH3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5WHH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFAALYTA LDATTSTHDK LAALTSYFSA AEPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
LVPTRLLTDI ARERAGLPEW LFEESYHAVG DLAETIAHIL PPASRDSELG
110 120 130 140 150
LTQWIEQRML PLRGLPPDEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG
160 170 180 190 200
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPQTDD
210 220 230 240 250
DTQAHAPEHD SDLGLPYPFF LAHPLQTDPA TLGDPGHWLI EWKWDGIRAQ
260 270 280 290 300
LVKRGGRVWL WSRGEDLITD RFPEVAALGE SLPDGYVIDG EILAWEPGAA
310 320 330 340 350
TPLPFARLQP RIARKTLTRK ILADSPAALL AYDLLEANGQ DLRMSPLADR
360 370 380 390 400
RARLDALSAS VEGTLARGLL RVSPLVSGAD WSALAALREE SRARGVEGLM
410 420 430 440 450
LKERESMYGV GRTKASGTWW KWKIEPYAVD AVLVYAQRGH GRRASLYTDY
460 470 480 490 500
TFAVWDEADG VRTLVPFAKA YSGLTDEEMH RVDAIVRKTT VDKFGPVRSV
510 520 530 540 550
TPTLVFEIGF EGIQASSRHK SGVAVRFPRM LRWRTDKHID DADTLAMLKG

FIDNRAG
Length:557
Mass (Da):62,050
Last modified:July 13, 2010 - v1
Checksum:i731AB59967F07816
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002014 Genomic DNA. Translation: ADG17918.1.
RefSeqiWP_013091719.1. NC_014118.1.

Genome annotation databases

EnsemblBacteriaiADG17918; ADG17918; BC1002_3906.
KEGGibge:BC1002_3906.
PATRICi37216922. VBIBurSp41388_4006.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002014 Genomic DNA. Translation: ADG17918.1.
RefSeqiWP_013091719.1. NC_014118.1.

3D structure databases

ProteinModelPortaliD5WHH3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi640511.BC1002_3906.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG17918; ADG17918; BC1002_3906.
KEGGibge:BC1002_3906.
PATRICi37216922. VBIBurSp41388_4006.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-3985-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia sp. CCGE1002."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCGE1002Imported.

Entry informationi

Entry nameiD5WHH3_BURSC
AccessioniPrimary (citable) accession number: D5WHH3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: July 22, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.