D5WHH3 (D5WHH3_BURSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADG17918.1

Gene names

Ordered Locus Names:

BC1002_3906 EMBL ADG17918.1

Organism

Burkholderia sp. (strain CCGE1002) [Complete proteome] [HAMAP] EMBL ADG17918.1

Taxonomic identifier

640511 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length	557 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADG17918.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5WHH3 [UniParc]. Last modified July 13, 2010. Version 1. Checksum: 731AB59967F07816	FASTA	557	62,050
	10 20 30 40 50 60 MKRFAALYTA LDATTSTHDK LAALTSYFSA AEPEDAAWAS YFLAGGKPRQ LVPTRLLTDI 70 80 90 100 110 120 ARERAGLPEW LFEESYHAVG DLAETIAHIL PPASRDSELG LTQWIEQRML PLRGLPPDEL 130 140 150 160 170 180 RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG VARQLVVRAL AEVAGVDHKR IAQRMVGWTD 190 200 210 220 230 240 SQQKPDAARY LRLIAPQTDD DTQAHAPEHD SDLGLPYPFF LAHPLQTDPA TLGDPGHWLI 250 260 270 280 290 300 EWKWDGIRAQ LVKRGGRVWL WSRGEDLITD RFPEVAALGE SLPDGYVIDG EILAWEPGAA 310 320 330 340 350 360 TPLPFARLQP RIARKTLTRK ILADSPAALL AYDLLEANGQ DLRMSPLADR RARLDALSAS 370 380 390 400 410 420 VEGTLARGLL RVSPLVSGAD WSALAALREE SRARGVEGLM LKERESMYGV GRTKASGTWW 430 440 450 460 470 480 KWKIEPYAVD AVLVYAQRGH GRRASLYTDY TFAVWDEADG VRTLVPFAKA YSGLTDEEMH 490 500 510 520 530 540 RVDAIVRKTT VDKFGPVRSV TPTLVFEIGF EGIQASSRHK SGVAVRFPRM LRWRTDKHID 550 DADTLAMLKG FIDNRAG

References

[1]

"Complete sequence of chromosome 2 of Burkholderia sp. CCGE1002." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCGE1002.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002014 Genomic DNA. Translation: ADG17918.1.
RefSeq	YP_003607429.1. NC_014118.1.
3D structure databases
ProteinModelPortal	D5WHH3.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9113219.
KEGG	bge:BC1002_3906.
PATRIC	37216922. VBIBurSp41388_4006.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
Enzyme and pathway databases
BioCyc	BSP640511:GJ7J-3985-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5WHH3_BURSC

Accession

Primary (citable) accession number: D5WHH3

Entry history

Integrated into UniProtKB/TrEMBL:	July 13, 2010
Last sequence update:	July 13, 2010
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)