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D5W7V6 (D5W7V6_BURSC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ADG15501.1
Gene names
Ordered Locus Names:BC1002_1425 EMBL ADG15501.1
OrganismBurkholderia sp. (strain CCGE1002) [Complete proteome] [HAMAP] EMBL ADG15501.1
Taxonomic identifier640511 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length937 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADG15501.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5W7V6 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 5BC1F9A38AB45ADC

FASTA937102,732
        10         20         30         40         50         60 
MNDRLELYHR KRRFEDTPEP AGATTRKRAA SKTGKTRKSA ARAAPDTLSY VIQEHDARRL 

        70         80         90        100        110        120 
HYDFRLELNG ALLSWAVPKG PSLDPSVKRL AVHVEDHPVE YGTFEGEIPP GNYGAGTVIV 

       130        140        150        160        170        180 
WDRGTWEPAG GAAEAARSYA AGKLKFHLHG EKLHGGWTLV RSHMRGSGDK EQWLLIKERD 

       190        200        210        220        230        240 
EEARDESDYD VLKELPGSVL ADGASKGRKT KQAKTSRDGK ATDAGKPARS ASPRPTADPK 

       250        260        270        280        290        300 
RPDIVATRTA QSLRELAASP SIEGAVKAAL PASLTPELAT LVDTAPPGGD WLYEIKFDGY 

       310        320        330        340        350        360 
RVLARIDHAS KKKGGAVSVF TRNGNDWTTK FSKQIEAIAG LDLQSAWLDG EAVVLDERDV 

       370        380        390        400        410        420 
PSFQLLQNAF DAHRPQDIVI YLFDLPFLNG YDLRGVPLEQ RRAILRALLE GVDDRVLRFS 

       430        440        450        460        470        480 
NDFAFSAGEL LNSACDMGLE GIIGKRRDSR YVSGRAPSWI KLKCRRRQEF VIGGYSEPAG 

       490        500        510        520        530        540 
SREAFGALLL GVYDADGQLQ YAGRVGTGFD AALLRSVKQA LDAHASKRMP FASAPRERSR 

       550        560        570        580        590        600 
TPVHWVEPVL VAECNFAEWT SDGIVRQASF VSLRGDKPAR QIVRETARQG ADVQQQTETA 

       610        620        630        640        650        660 
TDDSQQPGTP KKRAATKTAK NATPAAAASA PARTTATRSR AQSEIAGVRI SHPDRVIDKS 

       670        680        690        700        710        720 
SGASKLELVQ YYESIAEWML PHLRERPVAL VRAPEDIGGE LFFQKHSQKL SIPHVTQHEG 

       730        740        750        760        770        780 
LDPGHPALIT IDTLAALVGA AQMGTVEFHT WNAVASNIEK PDRMVFDLDP DPSLGWQRMV 

       790        800        810        820        830        840 
EAAQLTRSLL DELGLKSFVK TSGGKGFHVV VPLAKQAGWD EVKDFSQAVA QHMATTLPQY 

       850        860        870        880        890        900 
FSAKMGAQNR KKKIFIDYLR NNRGSSTVAA FSARARPGLG VSVPLAWDEL ESTTSGDQWG 

       910        920        930 
IRNVHERLDG LASDPWADYA KTRQRITAAM KKRLGVA

« Hide

References

[1]"Complete sequence of chromosome 1 of Burkholderia sp. CCGE1002."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCGE1002 EMBL ADG15501.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002013 Genomic DNA. Translation: ADG15501.1.
RefSeqYP_003605012.1. NC_014117.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9089107.
KEGGbge:BC1002_1425.
PATRIC37211648. VBIBurSp41388_1426.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycBSP640511:GJ7J-1446-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5W7V6_BURSC
AccessionPrimary (citable) accession number: D5W7V6
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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