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D5W7V6

- D5W7V6_BURSC

UniProt

D5W7V6 - D5W7V6_BURSC

Protein
Submitted name:

DNA ligase D

Gene

BC1002_1425

Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSP640511:GJ7J-1446-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:BC1002_1425Imported
    OrganismiBurkholderia sp. (strain CCGE1002)Imported
    Taxonomic identifieri640511 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000002190: Chromosome 1

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5W7V6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNDRLELYHR KRRFEDTPEP AGATTRKRAA SKTGKTRKSA ARAAPDTLSY    50
    VIQEHDARRL HYDFRLELNG ALLSWAVPKG PSLDPSVKRL AVHVEDHPVE 100
    YGTFEGEIPP GNYGAGTVIV WDRGTWEPAG GAAEAARSYA AGKLKFHLHG 150
    EKLHGGWTLV RSHMRGSGDK EQWLLIKERD EEARDESDYD VLKELPGSVL 200
    ADGASKGRKT KQAKTSRDGK ATDAGKPARS ASPRPTADPK RPDIVATRTA 250
    QSLRELAASP SIEGAVKAAL PASLTPELAT LVDTAPPGGD WLYEIKFDGY 300
    RVLARIDHAS KKKGGAVSVF TRNGNDWTTK FSKQIEAIAG LDLQSAWLDG 350
    EAVVLDERDV PSFQLLQNAF DAHRPQDIVI YLFDLPFLNG YDLRGVPLEQ 400
    RRAILRALLE GVDDRVLRFS NDFAFSAGEL LNSACDMGLE GIIGKRRDSR 450
    YVSGRAPSWI KLKCRRRQEF VIGGYSEPAG SREAFGALLL GVYDADGQLQ 500
    YAGRVGTGFD AALLRSVKQA LDAHASKRMP FASAPRERSR TPVHWVEPVL 550
    VAECNFAEWT SDGIVRQASF VSLRGDKPAR QIVRETARQG ADVQQQTETA 600
    TDDSQQPGTP KKRAATKTAK NATPAAAASA PARTTATRSR AQSEIAGVRI 650
    SHPDRVIDKS SGASKLELVQ YYESIAEWML PHLRERPVAL VRAPEDIGGE 700
    LFFQKHSQKL SIPHVTQHEG LDPGHPALIT IDTLAALVGA AQMGTVEFHT 750
    WNAVASNIEK PDRMVFDLDP DPSLGWQRMV EAAQLTRSLL DELGLKSFVK 800
    TSGGKGFHVV VPLAKQAGWD EVKDFSQAVA QHMATTLPQY FSAKMGAQNR 850
    KKKIFIDYLR NNRGSSTVAA FSARARPGLG VSVPLAWDEL ESTTSGDQWG 900
    IRNVHERLDG LASDPWADYA KTRQRITAAM KKRLGVA 937
    Length:937
    Mass (Da):102,732
    Last modified:July 13, 2010 - v1
    Checksum:i5BC1F9A38AB45ADC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002013 Genomic DNA. Translation: ADG15501.1.
    RefSeqiWP_013089373.1. NC_014117.1.
    YP_003605012.1. NC_014117.1.

    Genome annotation databases

    EnsemblBacteriaiADG15501; ADG15501; BC1002_1425.
    GeneIDi9089107.
    KEGGibge:BC1002_1425.
    PATRICi37211648. VBIBurSp41388_1426.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002013 Genomic DNA. Translation: ADG15501.1 .
    RefSeqi WP_013089373.1. NC_014117.1.
    YP_003605012.1. NC_014117.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG15501 ; ADG15501 ; BC1002_1425 .
    GeneIDi 9089107.
    KEGGi bge:BC1002_1425.
    PATRICi 37211648. VBIBurSp41388_1426.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci BSP640511:GJ7J-1446-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Burkholderia sp. CCGE1002."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCGE1002Imported.

    Entry informationi

    Entry nameiD5W7V6_BURSC
    AccessioniPrimary (citable) accession number: D5W7V6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3