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D5W7V6

- D5W7V6_BURSC

UniProt

D5W7V6 - D5W7V6_BURSC

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Protein
Submitted name: DNA ligase D
Gene
BC1002_1425
Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-1446-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:BC1002_1425Imported
OrganismiBurkholderia sp. (strain CCGE1002)Imported
Taxonomic identifieri640511 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002190: Chromosome 1

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5W7V6-1 [UniParc]FASTAAdd to Basket

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MNDRLELYHR KRRFEDTPEP AGATTRKRAA SKTGKTRKSA ARAAPDTLSY    50
VIQEHDARRL HYDFRLELNG ALLSWAVPKG PSLDPSVKRL AVHVEDHPVE 100
YGTFEGEIPP GNYGAGTVIV WDRGTWEPAG GAAEAARSYA AGKLKFHLHG 150
EKLHGGWTLV RSHMRGSGDK EQWLLIKERD EEARDESDYD VLKELPGSVL 200
ADGASKGRKT KQAKTSRDGK ATDAGKPARS ASPRPTADPK RPDIVATRTA 250
QSLRELAASP SIEGAVKAAL PASLTPELAT LVDTAPPGGD WLYEIKFDGY 300
RVLARIDHAS KKKGGAVSVF TRNGNDWTTK FSKQIEAIAG LDLQSAWLDG 350
EAVVLDERDV PSFQLLQNAF DAHRPQDIVI YLFDLPFLNG YDLRGVPLEQ 400
RRAILRALLE GVDDRVLRFS NDFAFSAGEL LNSACDMGLE GIIGKRRDSR 450
YVSGRAPSWI KLKCRRRQEF VIGGYSEPAG SREAFGALLL GVYDADGQLQ 500
YAGRVGTGFD AALLRSVKQA LDAHASKRMP FASAPRERSR TPVHWVEPVL 550
VAECNFAEWT SDGIVRQASF VSLRGDKPAR QIVRETARQG ADVQQQTETA 600
TDDSQQPGTP KKRAATKTAK NATPAAAASA PARTTATRSR AQSEIAGVRI 650
SHPDRVIDKS SGASKLELVQ YYESIAEWML PHLRERPVAL VRAPEDIGGE 700
LFFQKHSQKL SIPHVTQHEG LDPGHPALIT IDTLAALVGA AQMGTVEFHT 750
WNAVASNIEK PDRMVFDLDP DPSLGWQRMV EAAQLTRSLL DELGLKSFVK 800
TSGGKGFHVV VPLAKQAGWD EVKDFSQAVA QHMATTLPQY FSAKMGAQNR 850
KKKIFIDYLR NNRGSSTVAA FSARARPGLG VSVPLAWDEL ESTTSGDQWG 900
IRNVHERLDG LASDPWADYA KTRQRITAAM KKRLGVA 937
Length:937
Mass (Da):102,732
Last modified:July 13, 2010 - v1
Checksum:i5BC1F9A38AB45ADC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002013 Genomic DNA. Translation: ADG15501.1.
RefSeqiWP_013089373.1. NC_014117.1.
YP_003605012.1. NC_014117.1.

Genome annotation databases

EnsemblBacteriaiADG15501; ADG15501; BC1002_1425.
GeneIDi9089107.
KEGGibge:BC1002_1425.
PATRICi37211648. VBIBurSp41388_1426.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002013 Genomic DNA. Translation: ADG15501.1 .
RefSeqi WP_013089373.1. NC_014117.1.
YP_003605012.1. NC_014117.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG15501 ; ADG15501 ; BC1002_1425 .
GeneIDi 9089107.
KEGGi bge:BC1002_1425.
PATRICi 37211648. VBIBurSp41388_1426.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.

Enzyme and pathway databases

BioCyci BSP640511:GJ7J-1446-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia sp. CCGE1002."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCGE1002Imported.

Entry informationi

Entry nameiD5W7V6_BURSC
AccessioniPrimary (citable) accession number: D5W7V6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: September 3, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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