Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase D

Gene

BC1002_1425

Organism
Burkholderia sp. (strain CCGE1002)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-1446-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:BC1002_1425Imported
OrganismiBurkholderia sp. (strain CCGE1002)Imported
Taxonomic identifieri640511 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002190 Componenti: Chromosome 1

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.

Sequencei

Sequence statusi: Complete.

D5W7V6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDRLELYHR KRRFEDTPEP AGATTRKRAA SKTGKTRKSA ARAAPDTLSY
60 70 80 90 100
VIQEHDARRL HYDFRLELNG ALLSWAVPKG PSLDPSVKRL AVHVEDHPVE
110 120 130 140 150
YGTFEGEIPP GNYGAGTVIV WDRGTWEPAG GAAEAARSYA AGKLKFHLHG
160 170 180 190 200
EKLHGGWTLV RSHMRGSGDK EQWLLIKERD EEARDESDYD VLKELPGSVL
210 220 230 240 250
ADGASKGRKT KQAKTSRDGK ATDAGKPARS ASPRPTADPK RPDIVATRTA
260 270 280 290 300
QSLRELAASP SIEGAVKAAL PASLTPELAT LVDTAPPGGD WLYEIKFDGY
310 320 330 340 350
RVLARIDHAS KKKGGAVSVF TRNGNDWTTK FSKQIEAIAG LDLQSAWLDG
360 370 380 390 400
EAVVLDERDV PSFQLLQNAF DAHRPQDIVI YLFDLPFLNG YDLRGVPLEQ
410 420 430 440 450
RRAILRALLE GVDDRVLRFS NDFAFSAGEL LNSACDMGLE GIIGKRRDSR
460 470 480 490 500
YVSGRAPSWI KLKCRRRQEF VIGGYSEPAG SREAFGALLL GVYDADGQLQ
510 520 530 540 550
YAGRVGTGFD AALLRSVKQA LDAHASKRMP FASAPRERSR TPVHWVEPVL
560 570 580 590 600
VAECNFAEWT SDGIVRQASF VSLRGDKPAR QIVRETARQG ADVQQQTETA
610 620 630 640 650
TDDSQQPGTP KKRAATKTAK NATPAAAASA PARTTATRSR AQSEIAGVRI
660 670 680 690 700
SHPDRVIDKS SGASKLELVQ YYESIAEWML PHLRERPVAL VRAPEDIGGE
710 720 730 740 750
LFFQKHSQKL SIPHVTQHEG LDPGHPALIT IDTLAALVGA AQMGTVEFHT
760 770 780 790 800
WNAVASNIEK PDRMVFDLDP DPSLGWQRMV EAAQLTRSLL DELGLKSFVK
810 820 830 840 850
TSGGKGFHVV VPLAKQAGWD EVKDFSQAVA QHMATTLPQY FSAKMGAQNR
860 870 880 890 900
KKKIFIDYLR NNRGSSTVAA FSARARPGLG VSVPLAWDEL ESTTSGDQWG
910 920 930
IRNVHERLDG LASDPWADYA KTRQRITAAM KKRLGVA
Length:937
Mass (Da):102,732
Last modified:July 12, 2010 - v1
Checksum:i5BC1F9A38AB45ADC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002013 Genomic DNA. Translation: ADG15501.1.
RefSeqiWP_013089373.1. NC_014117.1.
YP_003605012.1. NC_014117.1.

Genome annotation databases

EnsemblBacteriaiADG15501; ADG15501; BC1002_1425.
KEGGibge:BC1002_1425.
PATRICi37211648. VBIBurSp41388_1426.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002013 Genomic DNA. Translation: ADG15501.1.
RefSeqiWP_013089373.1. NC_014117.1.
YP_003605012.1. NC_014117.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG15501; ADG15501; BC1002_1425.
KEGGibge:BC1002_1425.
PATRICi37211648. VBIBurSp41388_1426.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Enzyme and pathway databases

BioCyciBSP640511:GJ7J-1446-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia sp. CCGE1002."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
    Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCGE1002Imported.

Entry informationi

Entry nameiD5W7V6_BURSC
AccessioniPrimary (citable) accession number: D5W7V6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 12, 2010
Last sequence update: July 12, 2010
Last modified: March 31, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.