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D5W5A4 (D5W5A4_BURSC) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.1.1.42 EMBL ADG14946.1
Gene names
Ordered Locus Names:BC1002_0850 EMBL ADG14946.1
OrganismBurkholderia sp. (strain CCGE1002) [Complete proteome] [HAMAP] EMBL ADG14946.1
Taxonomic identifier640511 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length746 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region134 – 1418Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5511Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5551Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity PIRSR PIRSR009407-2
Binding site5501Substrate By similarity PIRSR PIRSR009407-2
Site2571Critical for catalysis By similarity
Site4221Critical for catalysis By similarity

Sequences

Sequence LengthMass (Da)Tools
D5W5A4 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 05503DBB412A69BA

FASTA74682,635
        10         20         30         40         50         60 
MTTQQPTIIY TLTDEAPLLA TAAFLPIIRT FTRPAGIEVE TSDISVAGRI LGEFPEFLTE 

        70         80         90        100        110        120 
AQRVPDNLAE LGRLTSLPDT NIIKLPNISA SVPQLTSAIK ELQAKGYKVP DYPEDPKTDA 

       130        140        150        160        170        180 
EKAIRQRYSK CLGSAVNPVL REGNSDRRAP AAVKNYARKH PHSMTEWSMA SRTHVATMRH 

       190        200        210        220        230        240 
GDFYHGEKSM TLDRARDVKM ELVTKNGKTI VLKPKVALED GEIIDSMFMS KKALLAFYED 

       250        260        270        280        290        300 
QMEDARKTGM MLSLHVKATM MKISHPIVFG HAVKVFYKDA FAKHGKLFEE LGVNVNNGLV 

       310        320        330        340        350        360 
NLYEKIEALP ESQREEVIRD LHACHEHRPE LAMVDSAKGI SNLHAPNDVI VDASMPAMIR 

       370        380        390        400        410        420 
AGGKMWGADG RPKDTKAVIP ESTFARIYQE IINFCKTNGA FDPVTMGTVP NVGLMAQKAE 

       430        440        450        460        470        480 
EYGSHDKTFE VPEDGEARIV DLASGEVLLT QNVEQGDIWR MCEVKDAAIR DWVKLAVTRV 

       490        500        510        520        530        540 
RNSRTPAVFW LDPYRPHEAE LIKKVEAYLK DYDTTGLDIQ IMSQVRAMRY TLERVVRGLD 

       550        560        570        580        590        600 
TISVTGNILR DYLTDLFPIM ELGTSAKMLS IVPLMAGGGM YETGAGGSAP KHVKQLVEEN 

       610        620        630        640        650        660 
HLRWDSLGEF LALAVSLEEL GIKTGNNRAK ILAKTLDTAT GKLLDNNRSP SPKTGELDNR 

       670        680        690        700        710        720 
GSQFYLAMYW AQELAAQTDD AALAAQFAPL ATQLTANEQV IVAELASVQG APADIGGYYK 

       730        740 
PDFNKLEEVM RPSRTFNEAL KAVRVE 

« Hide

References

[1]"Complete sequence of chromosome 1 of Burkholderia sp. CCGE1002."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Martinez-Romero E., Hernandez M.A.R., Tiedje J.M., Woyke T.
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCGE1002 EMBL ADG14946.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002013 Genomic DNA. Translation: ADG14946.1.
RefSeqYP_003604457.1. NC_014117.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG14946; ADG14946; BC1002_0850.
GeneID9088520.
KEGGbge:BC1002_0850.
PATRIC37210454. VBIBurSp41388_0840.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000240860.
KOK00031.

Enzyme and pathway databases

BioCycBSP640511:GJ7J-859-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5W5A4_BURSC
AccessionPrimary (citable) accession number: D5W5A4
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: November 13, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)