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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Metin_0052

Organism
Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMINF573063:GHL3-53-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Metin_0052Imported
OrganismiMethanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)Imported
Taxonomic identifieri573063 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000002061: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD5VUB2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.
OMAiEEKMNGY.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

D5VUB2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEVKAYSLE NIAKKLNLEV RDISRAVKRK ILREYEYKDT KILLFKKEFK
60 70 80 90 100
HIEKGTVVFL NDNLDVVRGY PKTYRALTLY PTIKEHFIDK VVIEEKLNGY
110 120 130 140 150
NIRVVYINDE FFALTRSGYI CPFTTKKVKK YLKLDILKEY PNYMLCGEMI
160 170 180 190 200
GLNNPYTPKF YEEAQQEDEN LAFYIFDIKE RESNKSLTVE ERLKLCNIYK
210 220 230 240 250
LPHVKPLAIV DKEKAHEKIK EIIKELEHKK REGVVLKDPN MDVVPLKYTT
260 270 280 290 300
HYTQCDDLRE AFKFFFDMGL DFLFSRVVRE GFMSYEFRES LEERKKRAKD
310 320 330 340 350
IGEAIILPMA ETIEKIASGE RVTEDIELIF DSEEDFYEYL EFLRKVKILV
360 370 380
KIKDIKELNG KLKVLIGKVY NKTNDKVLAY LNGTLWGE
Length:388
Mass (Da):45,962
Last modified:July 13, 2010 - v1
Checksum:i2F201A58CCCD2BB4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002009 Genomic DNA. Translation: ADG12724.1.
RefSeqiWP_013099470.1. NC_014122.1.
YP_003615688.1. NC_014122.1.

Genome annotation databases

EnsemblBacteriaiADG12724; ADG12724; Metin_0052.
GeneIDi9131051.
KEGGimif:Metin_0052.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002009 Genomic DNA. Translation: ADG12724.1.
RefSeqiWP_013099470.1. NC_014122.1.
YP_003615688.1. NC_014122.1.

3D structure databases

ProteinModelPortaliD5VUB2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG12724; ADG12724; Metin_0052.
GeneIDi9131051.
KEGGimif:Metin_0052.

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.
OMAiEEKMNGY.

Enzyme and pathway databases

BioCyciMINF573063:GHL3-53-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Methanocaldococcus infernus ME."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Sieprawska-Lupa M., Whitman W.B., Woyke T.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 11812 / JCM 15783 / MEImported.

Entry informationi

Entry nameiD5VUB2_METIM
AccessioniPrimary (citable) accession number: D5VUB2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: March 4, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.