Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D5VM30 (D5VM30_CAUST) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length883 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADG11553.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5VM30 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 05E11B6DB679B622

FASTA88396,272
        10         20         30         40         50         60 
MAARKLAAYE AKRDFEKTAE PSGAAAVAAS ERARFVIQKH AATRLHYDLR LEHEGVFLSW 

        70         80         90        100        110        120 
AVTRGPSRDP HDRRLAVHVE DHPLAYGDFE GTIPKGQYGG GTVMLWDRGW WAPEPGFDLQ 

       130        140        150        160        170        180 
KGLKKGEIKL VFAGERMKGG WVLVRINNDK FGDGKRENWL LIKHRDEFAM EGDLDFLEDT 

       190        200        210        220        230        240 
AFSIASGRTM EEIAAGKGKA PTPFMTKKAT ASDAIWNSKG SPEATAEKAA KETGAPRRRS 

       250        260        270        280        290        300 
AKPSAKAQAP RKVVKKAIAM PDFVPPQLCK LVDRPPGGGD WAHEIKFDGY RMQMRVEGGE 

       310        320        330        340        350        360 
AALRTRAGLD WSGKFPQLIK DGAALPDALI DGEVVALDAD GSPSFAGLQA ALAEESTDDL 

       370        380        390        400        410        420 
IFFAFDLLYA HGEDLTDLPL SERKARLKAL LPEDGDRIRY VEHFESGGEA VLQSACRMSL 

       430        440        450        460        470        480 
EGVVSKKLDA PYRSGKPGTW TKAKCRAGHE VVIGGWTTTG DAFRSLIVGV YRDGDLIHVG 

       490        500        510        520        530        540 
RVGTGYGRDK VARLLPKLKA AERKTSPFSG KGAPRGGANI HWVDPVLVAE IEFAGFTGDG 

       550        560        570        580        590        600 
SVRQASFKGL REDKPAQAVE AEAPAPAEDV ELAEPKAAFA MKRSDGKVSV RGVAISNPDK 

       610        620        630        640        650        660 
TLWPDAGDGT PGTKRDLAEY FEAVGDWMLE HIKGRPCSVI RMPDGVDGET FFQRHSGKGV 

       670        680        690        700        710        720 
SALIDEIVVS GDRKPYLVFN TVESLVAAAQ WGATELHPWN CRPNEQDVPG RLVFDLDPAP 

       730        740        750        760        770        780 
DVSFDAVVEG AREIRDRLEA LGLAPFCKTT GGKGLHVVTP LKPTKVDWDA AKAFAREVCA 

       790        800        810        820        830        840 
QMAADSPDLY LLNMSKKERG GKIFLDYLRN DRMSTAVAPL SPRGRPGAPV SWPVSWTQVR 

       850        860        870        880 
KGLDPKRFNI RTAPSLLKTL DAWDAYAESE RDLEAAIRKL GKD 

« Hide

References

[1]"Genome sequences of eight morphologically diverse alphaproteobacteria."
US DOE Joint Genome Institute
Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002008 Genomic DNA. Translation: ADG11553.1.
RefSeqYP_003594171.1. NC_014100.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG11553; ADG11553; Cseg_3113.
GeneID9104629.
KEGGcse:Cseg_3113.
PATRIC37206356. VBICauSeg118057_3170.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMANGLPDFQ.

Enzyme and pathway databases

BioCycCSEG509190:GHVG-3157-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5VM30_CAUST
AccessionPrimary (citable) accession number: D5VM30
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: May 14, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)