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D5VM30

- D5VM30_CAUST

UniProt

D5VM30 - D5VM30_CAUST

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Protein
Submitted name: DNA ligase D
Gene
Cseg_3113
Organism
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCSEG509190:GHVG-3157-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Cseg_3113Imported
OrganismiCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)Imported
Taxonomic identifieri509190 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
ProteomesiUP000002629: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5VM30-1 [UniParc]FASTAAdd to Basket

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MAARKLAAYE AKRDFEKTAE PSGAAAVAAS ERARFVIQKH AATRLHYDLR    50
LEHEGVFLSW AVTRGPSRDP HDRRLAVHVE DHPLAYGDFE GTIPKGQYGG 100
GTVMLWDRGW WAPEPGFDLQ KGLKKGEIKL VFAGERMKGG WVLVRINNDK 150
FGDGKRENWL LIKHRDEFAM EGDLDFLEDT AFSIASGRTM EEIAAGKGKA 200
PTPFMTKKAT ASDAIWNSKG SPEATAEKAA KETGAPRRRS AKPSAKAQAP 250
RKVVKKAIAM PDFVPPQLCK LVDRPPGGGD WAHEIKFDGY RMQMRVEGGE 300
AALRTRAGLD WSGKFPQLIK DGAALPDALI DGEVVALDAD GSPSFAGLQA 350
ALAEESTDDL IFFAFDLLYA HGEDLTDLPL SERKARLKAL LPEDGDRIRY 400
VEHFESGGEA VLQSACRMSL EGVVSKKLDA PYRSGKPGTW TKAKCRAGHE 450
VVIGGWTTTG DAFRSLIVGV YRDGDLIHVG RVGTGYGRDK VARLLPKLKA 500
AERKTSPFSG KGAPRGGANI HWVDPVLVAE IEFAGFTGDG SVRQASFKGL 550
REDKPAQAVE AEAPAPAEDV ELAEPKAAFA MKRSDGKVSV RGVAISNPDK 600
TLWPDAGDGT PGTKRDLAEY FEAVGDWMLE HIKGRPCSVI RMPDGVDGET 650
FFQRHSGKGV SALIDEIVVS GDRKPYLVFN TVESLVAAAQ WGATELHPWN 700
CRPNEQDVPG RLVFDLDPAP DVSFDAVVEG AREIRDRLEA LGLAPFCKTT 750
GGKGLHVVTP LKPTKVDWDA AKAFAREVCA QMAADSPDLY LLNMSKKERG 800
GKIFLDYLRN DRMSTAVAPL SPRGRPGAPV SWPVSWTQVR KGLDPKRFNI 850
RTAPSLLKTL DAWDAYAESE RDLEAAIRKL GKD 883
Length:883
Mass (Da):96,272
Last modified:July 13, 2010 - v1
Checksum:i05E11B6DB679B622
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002008 Genomic DNA. Translation: ADG11553.1.
RefSeqiWP_013080202.1. NC_014100.1.
YP_003594171.1. NC_014100.1.

Genome annotation databases

EnsemblBacteriaiADG11553; ADG11553; Cseg_3113.
GeneIDi9104629.
KEGGicse:Cseg_3113.
PATRICi37206356. VBICauSeg118057_3170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002008 Genomic DNA. Translation: ADG11553.1 .
RefSeqi WP_013080202.1. NC_014100.1.
YP_003594171.1. NC_014100.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG11553 ; ADG11553 ; Cseg_3113 .
GeneIDi 9104629.
KEGGi cse:Cseg_3113.
PATRICi 37206356. VBICauSeg118057_3170.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.

Enzyme and pathway databases

BioCyci CSEG509190:GHVG-3157-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059.

Entry informationi

Entry nameiD5VM30_CAUST
AccessioniPrimary (citable) accession number: D5VM30
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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