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D5VM30

- D5VM30_CAUST

UniProt

D5VM30 - D5VM30_CAUST

Protein
Submitted name:

DNA ligase D

Gene

Cseg_3113

Organism
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCSEG509190:GHVG-3157-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Cseg_3113Imported
    OrganismiCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)Imported
    Taxonomic identifieri509190 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
    ProteomesiUP000002629: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5VM30-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAARKLAAYE AKRDFEKTAE PSGAAAVAAS ERARFVIQKH AATRLHYDLR    50
    LEHEGVFLSW AVTRGPSRDP HDRRLAVHVE DHPLAYGDFE GTIPKGQYGG 100
    GTVMLWDRGW WAPEPGFDLQ KGLKKGEIKL VFAGERMKGG WVLVRINNDK 150
    FGDGKRENWL LIKHRDEFAM EGDLDFLEDT AFSIASGRTM EEIAAGKGKA 200
    PTPFMTKKAT ASDAIWNSKG SPEATAEKAA KETGAPRRRS AKPSAKAQAP 250
    RKVVKKAIAM PDFVPPQLCK LVDRPPGGGD WAHEIKFDGY RMQMRVEGGE 300
    AALRTRAGLD WSGKFPQLIK DGAALPDALI DGEVVALDAD GSPSFAGLQA 350
    ALAEESTDDL IFFAFDLLYA HGEDLTDLPL SERKARLKAL LPEDGDRIRY 400
    VEHFESGGEA VLQSACRMSL EGVVSKKLDA PYRSGKPGTW TKAKCRAGHE 450
    VVIGGWTTTG DAFRSLIVGV YRDGDLIHVG RVGTGYGRDK VARLLPKLKA 500
    AERKTSPFSG KGAPRGGANI HWVDPVLVAE IEFAGFTGDG SVRQASFKGL 550
    REDKPAQAVE AEAPAPAEDV ELAEPKAAFA MKRSDGKVSV RGVAISNPDK 600
    TLWPDAGDGT PGTKRDLAEY FEAVGDWMLE HIKGRPCSVI RMPDGVDGET 650
    FFQRHSGKGV SALIDEIVVS GDRKPYLVFN TVESLVAAAQ WGATELHPWN 700
    CRPNEQDVPG RLVFDLDPAP DVSFDAVVEG AREIRDRLEA LGLAPFCKTT 750
    GGKGLHVVTP LKPTKVDWDA AKAFAREVCA QMAADSPDLY LLNMSKKERG 800
    GKIFLDYLRN DRMSTAVAPL SPRGRPGAPV SWPVSWTQVR KGLDPKRFNI 850
    RTAPSLLKTL DAWDAYAESE RDLEAAIRKL GKD 883
    Length:883
    Mass (Da):96,272
    Last modified:July 13, 2010 - v1
    Checksum:i05E11B6DB679B622
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002008 Genomic DNA. Translation: ADG11553.1.
    RefSeqiWP_013080202.1. NC_014100.1.
    YP_003594171.1. NC_014100.1.

    Genome annotation databases

    EnsemblBacteriaiADG11553; ADG11553; Cseg_3113.
    GeneIDi9104629.
    KEGGicse:Cseg_3113.
    PATRICi37206356. VBICauSeg118057_3170.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002008 Genomic DNA. Translation: ADG11553.1 .
    RefSeqi WP_013080202.1. NC_014100.1.
    YP_003594171.1. NC_014100.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG11553 ; ADG11553 ; Cseg_3113 .
    GeneIDi 9104629.
    KEGGi cse:Cseg_3113.
    PATRICi 37206356. VBICauSeg118057_3170.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.

    Enzyme and pathway databases

    BioCyci CSEG509190:GHVG-3157-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059Imported.

    Entry informationi

    Entry nameiD5VM30_CAUST
    AccessioniPrimary (citable) accession number: D5VM30
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3