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Protein
Submitted name:

DNA ligase D

Gene

Cseg_3113

Organism
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCSEG509190:GHVG-3157-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Cseg_3113Imported
OrganismiCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)Imported
Taxonomic identifieri509190 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
ProteomesiUP000002629 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5VM30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARKLAAYE AKRDFEKTAE PSGAAAVAAS ERARFVIQKH AATRLHYDLR
60 70 80 90 100
LEHEGVFLSW AVTRGPSRDP HDRRLAVHVE DHPLAYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGW WAPEPGFDLQ KGLKKGEIKL VFAGERMKGG WVLVRINNDK
160 170 180 190 200
FGDGKRENWL LIKHRDEFAM EGDLDFLEDT AFSIASGRTM EEIAAGKGKA
210 220 230 240 250
PTPFMTKKAT ASDAIWNSKG SPEATAEKAA KETGAPRRRS AKPSAKAQAP
260 270 280 290 300
RKVVKKAIAM PDFVPPQLCK LVDRPPGGGD WAHEIKFDGY RMQMRVEGGE
310 320 330 340 350
AALRTRAGLD WSGKFPQLIK DGAALPDALI DGEVVALDAD GSPSFAGLQA
360 370 380 390 400
ALAEESTDDL IFFAFDLLYA HGEDLTDLPL SERKARLKAL LPEDGDRIRY
410 420 430 440 450
VEHFESGGEA VLQSACRMSL EGVVSKKLDA PYRSGKPGTW TKAKCRAGHE
460 470 480 490 500
VVIGGWTTTG DAFRSLIVGV YRDGDLIHVG RVGTGYGRDK VARLLPKLKA
510 520 530 540 550
AERKTSPFSG KGAPRGGANI HWVDPVLVAE IEFAGFTGDG SVRQASFKGL
560 570 580 590 600
REDKPAQAVE AEAPAPAEDV ELAEPKAAFA MKRSDGKVSV RGVAISNPDK
610 620 630 640 650
TLWPDAGDGT PGTKRDLAEY FEAVGDWMLE HIKGRPCSVI RMPDGVDGET
660 670 680 690 700
FFQRHSGKGV SALIDEIVVS GDRKPYLVFN TVESLVAAAQ WGATELHPWN
710 720 730 740 750
CRPNEQDVPG RLVFDLDPAP DVSFDAVVEG AREIRDRLEA LGLAPFCKTT
760 770 780 790 800
GGKGLHVVTP LKPTKVDWDA AKAFAREVCA QMAADSPDLY LLNMSKKERG
810 820 830 840 850
GKIFLDYLRN DRMSTAVAPL SPRGRPGAPV SWPVSWTQVR KGLDPKRFNI
860 870 880
RTAPSLLKTL DAWDAYAESE RDLEAAIRKL GKD
Length:883
Mass (Da):96,272
Last modified:July 13, 2010 - v1
Checksum:i05E11B6DB679B622
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002008 Genomic DNA. Translation: ADG11553.1.
RefSeqiWP_013080202.1. NC_014100.1.
YP_003594171.1. NC_014100.1.

Genome annotation databases

EnsemblBacteriaiADG11553; ADG11553; Cseg_3113.
KEGGicse:Cseg_3113.
PATRICi37206356. VBICauSeg118057_3170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002008 Genomic DNA. Translation: ADG11553.1.
RefSeqiWP_013080202.1. NC_014100.1.
YP_003594171.1. NC_014100.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG11553; ADG11553; Cseg_3113.
KEGGicse:Cseg_3113.
PATRICi37206356. VBICauSeg118057_3170.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.

Enzyme and pathway databases

BioCyciCSEG509190:GHVG-3157-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059Imported.

Entry informationi

Entry nameiD5VM30_CAUST
AccessioniPrimary (citable) accession number: D5VM30
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: April 29, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.