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Protein
Submitted name:

DNA ligase D

Gene

Cseg_3113

Organism
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciCSEG509190:G1GKR-3168-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Cseg_3113Imported
OrganismiCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) (Mycoplana segnis)Imported
Taxonomic identifieri509190 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
Proteomesi
  • UP000002629 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi509190.Cseg_3113

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini353 – 487DNA_LIGASE_A3InterPro annotationAdd BLAST135

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000222509
KOiK01971
OMAiAMMVEDH
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

D5VM30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARKLAAYE AKRDFEKTAE PSGAAAVAAS ERARFVIQKH AATRLHYDLR
60 70 80 90 100
LEHEGVFLSW AVTRGPSRDP HDRRLAVHVE DHPLAYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGW WAPEPGFDLQ KGLKKGEIKL VFAGERMKGG WVLVRINNDK
160 170 180 190 200
FGDGKRENWL LIKHRDEFAM EGDLDFLEDT AFSIASGRTM EEIAAGKGKA
210 220 230 240 250
PTPFMTKKAT ASDAIWNSKG SPEATAEKAA KETGAPRRRS AKPSAKAQAP
260 270 280 290 300
RKVVKKAIAM PDFVPPQLCK LVDRPPGGGD WAHEIKFDGY RMQMRVEGGE
310 320 330 340 350
AALRTRAGLD WSGKFPQLIK DGAALPDALI DGEVVALDAD GSPSFAGLQA
360 370 380 390 400
ALAEESTDDL IFFAFDLLYA HGEDLTDLPL SERKARLKAL LPEDGDRIRY
410 420 430 440 450
VEHFESGGEA VLQSACRMSL EGVVSKKLDA PYRSGKPGTW TKAKCRAGHE
460 470 480 490 500
VVIGGWTTTG DAFRSLIVGV YRDGDLIHVG RVGTGYGRDK VARLLPKLKA
510 520 530 540 550
AERKTSPFSG KGAPRGGANI HWVDPVLVAE IEFAGFTGDG SVRQASFKGL
560 570 580 590 600
REDKPAQAVE AEAPAPAEDV ELAEPKAAFA MKRSDGKVSV RGVAISNPDK
610 620 630 640 650
TLWPDAGDGT PGTKRDLAEY FEAVGDWMLE HIKGRPCSVI RMPDGVDGET
660 670 680 690 700
FFQRHSGKGV SALIDEIVVS GDRKPYLVFN TVESLVAAAQ WGATELHPWN
710 720 730 740 750
CRPNEQDVPG RLVFDLDPAP DVSFDAVVEG AREIRDRLEA LGLAPFCKTT
760 770 780 790 800
GGKGLHVVTP LKPTKVDWDA AKAFAREVCA QMAADSPDLY LLNMSKKERG
810 820 830 840 850
GKIFLDYLRN DRMSTAVAPL SPRGRPGAPV SWPVSWTQVR KGLDPKRFNI
860 870 880
RTAPSLLKTL DAWDAYAESE RDLEAAIRKL GKD
Length:883
Mass (Da):96,272
Last modified:July 13, 2010 - v1
Checksum:i05E11B6DB679B622
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002008 Genomic DNA Translation: ADG11553.1
RefSeqiWP_013080202.1, NC_014100.1

Genome annotation databases

EnsemblBacteriaiADG11553; ADG11553; Cseg_3113
GeneIDi35835638
KEGGicse:Cseg_3113

Similar proteinsi

Entry informationi

Entry nameiD5VM30_CAUST
AccessioniPrimary (citable) accession number: D5VM30
Entry historyiIntegrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: April 25, 2018
This is version 45 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health