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D5UYT4

- D5UYT4_TSUPD

UniProt

D5UYT4 - D5UYT4_TSUPD

Protein

DNA ligase

Gene

Tpau_3810

Organism
Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciTPAU521096:GI2W-3851-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:Tpau_3810Imported
    OrganismiTsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum)Imported
    Taxonomic identifieri521096 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeTsukamurellaceaeTsukamurella
    ProteomesiUP000001213: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000036008.
    KOiK01971.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 2 hits.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5UYT4-1 [UniParc]FASTAAdd to Basket

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    MMAGSLRRQR CPSALSSAYA AVVGPLRHNQ EVLFADVVAA STEVGATRAR    50
    TAKIAALTRL LRDADAADVR PVVAWLSGSL LQERLGTGWR GVAKILDEQV 100
    AAATPSLTVA DVSSAFDELA GTAGAGSVAR RGELLGALFG RATADEQRLL 150
    VGLITGEVRH GALAGVMTDA VAHAAGVPLA TVRRAAMLSG SLPQTASAAL 200
    AGGADALAGF GLEVLRGVSP MLASPADDLP AALADLGPEV SVEFKLDGAR 250
    IQVHRNGDAV RVYTRTLRDI TDAVPEIVET AMALPCTSVV LDGESLALTD 300
    AGRPRPFQET MSRFGSAGSM EDERSVLRPF FFDCLHLDGR DLLDEPLSAR 350
    LAALEQVAGD LRIPALTRPS VEQASAHLEA ALAAGHEGVM VKGLDSPYAA 400
    GRRGRAWQKV KQSYTLDLVV LGAEWGYGRR TGLLSNLHLG ARDPDGGEPI 450
    MVGKTFKGLT DALLRWQTEE FPRHERQRSE HTVYLRPEIV VEIELDGVQR 500
    SRRYPGGVAL RFARVLRYRP DKTAAEADTI DAVRALLPG 539
    Length:539
    Mass (Da):57,196
    Last modified:July 13, 2010 - v1
    Checksum:i0EE1885C9BC8E7D0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001966 Genomic DNA. Translation: ADG80387.1.
    RefSeqiWP_013128383.1. NC_014158.1.
    YP_003648726.1. NC_014158.1.

    Genome annotation databases

    EnsemblBacteriaiADG80387; ADG80387; Tpau_3810.
    GeneIDi9157990.
    KEGGitpr:Tpau_3810.
    PATRICi38310977. VBITsuPau718_3817.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001966 Genomic DNA. Translation: ADG80387.1 .
    RefSeqi WP_013128383.1. NC_014158.1.
    YP_003648726.1. NC_014158.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG80387 ; ADG80387 ; Tpau_3810 .
    GeneIDi 9157990.
    KEGGi tpr:Tpau_3810.
    PATRICi 38310977. VBITsuPau718_3817.

    Phylogenomic databases

    HOGENOMi HOG000036008.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci TPAU521096:GI2W-3851-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 2 hits.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040Imported.

    Entry informationi

    Entry nameiD5UYT4_TSUPD
    AccessioniPrimary (citable) accession number: D5UYT4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3