D5UUE1 (D5UUE1_TSUPD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

Tpau_0878 EMBL ADG77512.1

Organism

Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum) [Complete proteome] [HAMAP] EMBL ADG77512.1

Taxonomic identifier

521096 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Tsukamurellaceae › Tsukamurella › Tsukamurella paurometabola

Protein attributes

Sequence length	380 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622 RuleBase RU004247
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ADG77512.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5UUE1 [UniParc]. Last modified July 13, 2010. Version 1. Checksum: C16955A85516A956	FASTA	380	39,716
	10 20 30 40 50 60 MLVMTEIPGR LDRPTALIDL GAVTHNVRVV ARHAPTADVM AVLKADGYGH GAVPVARAAL 70 80 90 100 110 120 AGGATELGVT TVDEALVLRD AGITVPILSW LSTSGYERAI AADVRIGVSS PRQLAEVLAA 130 140 150 160 170 180 AGRAGAPAVL HVKVDTGLNR NGVAPHEWAT TRDALVDAER AGLARLQGVF THLAHGDEPD 190 200 210 220 230 240 HPFLDVQRDA LAAAAADARA HGLYPTQVHA ANSAAALTRP DLHFDLVRPG IAIYGGVPVP 250 260 270 280 290 300 DRDFGLRPVM TFAAPVILVK PLAAGDGVSY GHTWIAPRDT VVGLVPAGYA DGVWRPLSGR 310 320 330 340 350 360 FEVTVQGRRF PQVGRVCMDQ FVIDLGPDGG GVSEGDTAVL FGAAPGAARA CDWGEKLGTI 370 380 DYEVLTAVRG RVHREYTGQS

References

[1]

"The complete chromosome of Tsukamurella paurometabola DSM 20162." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Munk A.C., Brettin T., Detter J.C., Tapia R., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001966 Genomic DNA. Translation: ADG77512.1.
RefSeq	YP_003645851.1. NC_014158.1.
3D structure databases
ProteinModelPortal	D5UUE1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG77512; ADG77512; Tpau_0878.
GeneID	9155018.
KEGG	tpr:Tpau_0878.
PATRIC	38304969. VBITsuPau718_0852.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5UUE1_TSUPD

Accession

Primary (citable) accession number: D5UUE1

Entry history

Integrated into UniProtKB/TrEMBL:	July 13, 2010
Last sequence update:	July 13, 2010
Last modified:	May 1, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)