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D5UQM2

- D5UQM2_TSUPD

UniProt

D5UQM2 - D5UQM2_TSUPD

Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Tpau_0201

Organism
Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Enzyme and pathway databases

    BioCyciTPAU521096:GI2W-204-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, polymerase domain proteinImported
    Gene namesi
    Ordered Locus Names:Tpau_0201Imported
    OrganismiTsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum)Imported
    Taxonomic identifieri521096 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeTsukamurellaceaeTsukamurella
    ProteomesiUP000001213: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5UQM2-1 [UniParc]FASTAAdd to Basket

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    MAQTRENREV DGVHVQLTNL DKVLYPATGT TKAEVIDYYQ AIAPVAVPHL    50
    RDRPLTRKRW PNGVDKTAFF EKRLPSHAPA WIRRGAQHHS DGESLYPVVE 100
    NTADMVWLGQ QAALELHVPQ WTFIADGENE EPGPPDRLVL DLDPGPGSTL 150
    DDCAALALRI RDLLAAMGLD GHPVTSGSKG MHIYSTLPGG LSSPGARKVA 200
    HAIASQLEAE SPELVTASMS KDQRGGRIFV DWSQNSGSKT TISPYSLRGR 250
    EHPWVAAPRS WDELSRPGLQ QLEFHDVLAR VRTSGDLLAP LLSGTPAPPE 300
    PVDLDEYRAK RDAAKTPEPF GGAASTGDPI FVIQEHHARR LHYDFRLEHD 350
    GVLASWAVPK NLPDDPAVNH LAVRTEDHPM DYAAFEGSIP KGEYGGGDVS 400
    IWDHGTYELE KWRKDEVIVT LHGARLRGLR YALIRTGEKN WLAHLTKDKT 450
    APAKAAAAQA PDPMLPSEST IDRLSGEDWA FEGKWDGYRI MATVRGGALS 500
    LRTRSGRVVT GEFPEFESLA RDLDGMDVVL DGEAVVLDDA GVPSFHLMAG 550
    GESRTGAVRL YLFDVLELNG VDLTKRPWSV RREVLESLAP LLDSDDSIGV 600
    PALVEASTGL VAATLSAERG WEGIVAKRRD SPYLPGQRVR AWLKHKNWRD 650
    LQVAIGGWKP GKGSRANRIG SVLVGLPAET GLVYLGSVGS GLRDRDLDAL 700
    AQRLEPLRMK RSPFTASIDD PDARDAVWVL PQVVGDVRYS SLRRGGHLRQ 750
    PSWRGFRDDL LPGDLPGEAE IPWEGPDE 778
    Length:778
    Mass (Da):85,291
    Last modified:July 13, 2010 - v1
    Checksum:iCE6C63968BDE0339
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001966 Genomic DNA. Translation: ADG76855.1.
    RefSeqiWP_013124910.1. NC_014158.1.
    YP_003645194.1. NC_014158.1.

    Genome annotation databases

    EnsemblBacteriaiADG76855; ADG76855; Tpau_0201.
    GeneIDi9154335.
    KEGGitpr:Tpau_0201.
    PATRICi38303657. VBITsuPau718_0202.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001966 Genomic DNA. Translation: ADG76855.1 .
    RefSeqi WP_013124910.1. NC_014158.1.
    YP_003645194.1. NC_014158.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG76855 ; ADG76855 ; Tpau_0201 .
    GeneIDi 9154335.
    KEGGi tpr:Tpau_0201.
    PATRICi 38303657. VBITsuPau718_0202.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci TPAU521096:GI2W-204-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040Imported.

    Entry informationi

    Entry nameiD5UQM2_TSUPD
    AccessioniPrimary (citable) accession number: D5UQM2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3