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D5UQM2

- D5UQM2_TSUPD

UniProt

D5UQM2 - D5UQM2_TSUPD

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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene
Tpau_0201
Organism
Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciTPAU521096:GI2W-204-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Tpau_0201Imported
OrganismiTsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum)Imported
Taxonomic identifieri521096 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeTsukamurellaceaeTsukamurella
ProteomesiUP000001213: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5UQM2-1 [UniParc]FASTAAdd to Basket

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MAQTRENREV DGVHVQLTNL DKVLYPATGT TKAEVIDYYQ AIAPVAVPHL    50
RDRPLTRKRW PNGVDKTAFF EKRLPSHAPA WIRRGAQHHS DGESLYPVVE 100
NTADMVWLGQ QAALELHVPQ WTFIADGENE EPGPPDRLVL DLDPGPGSTL 150
DDCAALALRI RDLLAAMGLD GHPVTSGSKG MHIYSTLPGG LSSPGARKVA 200
HAIASQLEAE SPELVTASMS KDQRGGRIFV DWSQNSGSKT TISPYSLRGR 250
EHPWVAAPRS WDELSRPGLQ QLEFHDVLAR VRTSGDLLAP LLSGTPAPPE 300
PVDLDEYRAK RDAAKTPEPF GGAASTGDPI FVIQEHHARR LHYDFRLEHD 350
GVLASWAVPK NLPDDPAVNH LAVRTEDHPM DYAAFEGSIP KGEYGGGDVS 400
IWDHGTYELE KWRKDEVIVT LHGARLRGLR YALIRTGEKN WLAHLTKDKT 450
APAKAAAAQA PDPMLPSEST IDRLSGEDWA FEGKWDGYRI MATVRGGALS 500
LRTRSGRVVT GEFPEFESLA RDLDGMDVVL DGEAVVLDDA GVPSFHLMAG 550
GESRTGAVRL YLFDVLELNG VDLTKRPWSV RREVLESLAP LLDSDDSIGV 600
PALVEASTGL VAATLSAERG WEGIVAKRRD SPYLPGQRVR AWLKHKNWRD 650
LQVAIGGWKP GKGSRANRIG SVLVGLPAET GLVYLGSVGS GLRDRDLDAL 700
AQRLEPLRMK RSPFTASIDD PDARDAVWVL PQVVGDVRYS SLRRGGHLRQ 750
PSWRGFRDDL LPGDLPGEAE IPWEGPDE 778
Length:778
Mass (Da):85,291
Last modified:July 13, 2010 - v1
Checksum:iCE6C63968BDE0339
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001966 Genomic DNA. Translation: ADG76855.1.
RefSeqiWP_013124910.1. NC_014158.1.
YP_003645194.1. NC_014158.1.

Genome annotation databases

EnsemblBacteriaiADG76855; ADG76855; Tpau_0201.
GeneIDi9154335.
KEGGitpr:Tpau_0201.
PATRICi38303657. VBITsuPau718_0202.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001966 Genomic DNA. Translation: ADG76855.1 .
RefSeqi WP_013124910.1. NC_014158.1.
YP_003645194.1. NC_014158.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG76855 ; ADG76855 ; Tpau_0201 .
GeneIDi 9154335.
KEGGi tpr:Tpau_0201.
PATRICi 38303657. VBITsuPau718_0202.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.

Enzyme and pathway databases

BioCyci TPAU521096:GI2W-204-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040.

Entry informationi

Entry nameiD5UQM2_TSUPD
AccessioniPrimary (citable) accession number: D5UQM2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: September 3, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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