D5UQM2 (D5UQM2_TSUPD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, polymerase domain protein EMBL ADG76855.1

Gene names

Ordered Locus Names:

Tpau_0201 EMBL ADG76855.1

Organism

Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum) [Complete proteome] [HAMAP] EMBL ADG76855.1

Taxonomic identifier

521096 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Tsukamurellaceae › Tsukamurella › Tsukamurella paurometabola

Protein attributes

Sequence length	778 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5UQM2 [UniParc]. Last modified July 13, 2010. Version 1. Checksum: CE6C63968BDE0339	FASTA	778	85,291
	10 20 30 40 50 60 MAQTRENREV DGVHVQLTNL DKVLYPATGT TKAEVIDYYQ AIAPVAVPHL RDRPLTRKRW 70 80 90 100 110 120 PNGVDKTAFF EKRLPSHAPA WIRRGAQHHS DGESLYPVVE NTADMVWLGQ QAALELHVPQ 130 140 150 160 170 180 WTFIADGENE EPGPPDRLVL DLDPGPGSTL DDCAALALRI RDLLAAMGLD GHPVTSGSKG 190 200 210 220 230 240 MHIYSTLPGG LSSPGARKVA HAIASQLEAE SPELVTASMS KDQRGGRIFV DWSQNSGSKT 250 260 270 280 290 300 TISPYSLRGR EHPWVAAPRS WDELSRPGLQ QLEFHDVLAR VRTSGDLLAP LLSGTPAPPE 310 320 330 340 350 360 PVDLDEYRAK RDAAKTPEPF GGAASTGDPI FVIQEHHARR LHYDFRLEHD GVLASWAVPK 370 380 390 400 410 420 NLPDDPAVNH LAVRTEDHPM DYAAFEGSIP KGEYGGGDVS IWDHGTYELE KWRKDEVIVT 430 440 450 460 470 480 LHGARLRGLR YALIRTGEKN WLAHLTKDKT APAKAAAAQA PDPMLPSEST IDRLSGEDWA 490 500 510 520 530 540 FEGKWDGYRI MATVRGGALS LRTRSGRVVT GEFPEFESLA RDLDGMDVVL DGEAVVLDDA 550 560 570 580 590 600 GVPSFHLMAG GESRTGAVRL YLFDVLELNG VDLTKRPWSV RREVLESLAP LLDSDDSIGV 610 620 630 640 650 660 PALVEASTGL VAATLSAERG WEGIVAKRRD SPYLPGQRVR AWLKHKNWRD LQVAIGGWKP 670 680 690 700 710 720 GKGSRANRIG SVLVGLPAET GLVYLGSVGS GLRDRDLDAL AQRLEPLRMK RSPFTASIDD 730 740 750 760 770 PDARDAVWVL PQVVGDVRYS SLRRGGHLRQ PSWRGFRDDL LPGDLPGEAE IPWEGPDE

References

[1]

"The complete chromosome of Tsukamurella paurometabola DSM 20162." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Munk A.C., Brettin T., Detter J.C., Tapia R., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001966 Genomic DNA. Translation: ADG76855.1.
RefSeq	YP_003645194.1. NC_014158.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG76855; ADG76855; Tpau_0201.
GeneID	9154335.
KEGG	tpr:Tpau_0201.
PATRIC	38303657. VBITsuPau718_0202.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5UQM2_TSUPD

Accession

Primary (citable) accession number: D5UQM2

Entry history

Integrated into UniProtKB/TrEMBL:	July 13, 2010
Last sequence update:	July 13, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)