D5U1X0 (D5U1X0_THEAM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23P HAMAP-Rule MF_01369

Gene names

Name:	rpl23p HAMAP-Rule MF_01369
Ordered Locus Names:	Tagg_0847

Organism

Thermosphaera aggregans (strain DSM 11486 / M11TL) [Complete proteome] [HAMAP] EMBL ADG91120.1

Taxonomic identifier

633148 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Crenarchaeota › Thermoprotei › Desulfurococcales › Desulfurococcaceae › Thermosphaera › Thermosphaera aggregans

Protein attributes

Sequence length	91 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome By similarity. HAMAP-Rule MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29 By similarity. HAMAP-Rule MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP-Rule MF_01369 RuleBase RU003934

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01369 RuleBase RU003934 EMBL ADG91120.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5U1X0 [UniParc]. Last modified July 13, 2010. Version 1. Checksum: FAC26B075FA4F229	FASTA	91	10,021
	10 20 30 40 50 60 MSGETGKLYS IIVRPVQSEK ALGMIDKQNT LTFIVDINAT KQDVKKAVET LFNVKVEKVR 70 80 90 ILVTPKGEKK AYVKLAPEYK ASDVAAQIGL I

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)." Spring S., Rachel R., Lapidus A., Davenport K., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Brettin T., Detter J.C., Tapia R., Han C., Heimerl T., Weikl F., Brambilla E., Goker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 2:245-259(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 11486 / M11TL.
[2]	"Complete genome sequence of Thermosphaera aggregans type strain (M11TL)." US DOE Joint Genome Institute (JGI-PGF) Spring S., Lapidus A., Munk C., Schroeder M., Glavina Del Rio T., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A. , Chen A., Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Brettin T., Detter J.C., Tapia R., Han C., Chain P., Heimerl T., Weik F., Goker M., Rachel R., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DSM 11486.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001939 Genomic DNA. Translation: ADG91120.1.
RefSeq	YP_003650072.1. NC_014160.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADG91120; ADG91120; Tagg_0847.
GeneID	9165863.
KEGG	tag:Tagg_0847.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000231364.
KO	K02892.
OMA	MIEEENK.
Family and domain databases
Gene3D	3.30.70.330. 1 hit.
HAMAP	MF_01369_A. Ribosomal_L23_A. MF_01369_B. Ribosomal_L23_B.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR019985. Ribosomal_L23. IPR012678. Ribosomal_L23/L15e_core_dom. IPR001014. Ribosomal_L23/L25_CS. IPR013025. Ribosomal_L25/23. [Graphical view]
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
TIGRFAMs	TIGR03636. L23_arch. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5U1X0_THEAM

Accession

Primary (citable) accession number: D5U1X0

Entry history

Integrated into UniProtKB/TrEMBL:	July 13, 2010
Last sequence update:	July 13, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)