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D5TGR2 (D5TGR2_BIFAV) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ornithine carbamoyltransferase, catabolic HAMAP-Rule MF_01109
Short name=OTCase HAMAP-Rule MF_01109
EC=2.1.3.3 HAMAP-Rule MF_01109
Alternative name(s):
Ornithine carbamoyltransferase HAMAP-Rule MF_01109
Gene names
Name:arcB HAMAP-Rule MF_01109
Ordered Locus Names:BalV_0700
OrganismBifidobacterium animalis subsp. lactis (strain V9) [Complete proteome] [HAMAP]
Taxonomic identifier573236 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length320 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Carbamoyl phosphate + L-ornithine = phosphate + L-citrulline. HAMAP-Rule MF_01109 SAAS SAAS002292

Pathway

Amino-acid degradation; L-arginine degradation via ADI pathway; carbamoyl phosphate from L-arginine: step 2/2. HAMAP-Rule MF_01109

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01109 SAAS SAAS002292.

Sequence similarities

Belongs to the ATCase/OTCase family. HAMAP-Rule MF_01109 RuleBase RU003634

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region52 – 565Carbamoyl phosphate binding By similarity HAMAP-Rule MF_01109
Region268 – 2714Ornithine binding By similarity HAMAP-Rule MF_01109

Sites

Binding site1031Carbamoyl phosphate By similarity HAMAP-Rule MF_01109
Binding site1301Carbamoyl phosphate By similarity HAMAP-Rule MF_01109

Sequences

Sequence LengthMass (Da)Tools
D5TGR2 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: CBCE8F2AB2771969

FASTA32035,281
        10         20         30         40         50         60 
MGELRHMLRD DDVNHEEQKQ ILELGMKFRA DRFYHRPFEG PQGVAVIFDK PSTRTRSSFS 

        70         80         90        100        110        120 
IGVAELGGYP LVIDKSGSQL GRGEPVADTA EVLTRMAYGI VWRTFEQSRV EQMARVATVP 

       130        140        150        160        170        180 
VVNALTDEFH PCQVLADFLT LAQFKGGVDN LENLKIAYVG DAANNMSNSY LLAGAVAGMD 

       190        200        210        220        230        240 
VRVAGPNGYL PDQKIVEDAQ AIAETTGGSI MVTVDPEQAV DGVDCIFTDT WVSMGEEAEY 

       250        260        270        280        290        300 
AIRSKPFWPY QVNERLMGLA KPDALFQHCL PAYRGKEVTT GVIDGPQSVV WDEAENRLHA 

       310        320 
QKALLTWLIG KQRGDESLLS

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References

[1]"Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9."
Sun Z., Chen X., Wang J., Gao P., Zhou Z., Ren Y., Sun T., Wang L., Meng H., Chen W., Zhang H.
J. Bacteriol. 192:4080-4081(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: V9 EMBL ADG33288.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001892 Genomic DNA. Translation: ADG33288.1.
RefSeqYP_005581067.1. NC_017217.1.

3D structure databases

ProteinModelPortalD5TGR2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG33288; ADG33288; BalV_0700.
GeneID12171162.
KEGGblv:BalV_0700.
PATRIC42763764. VBIBifAni108068_0727.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000022686.
KOK00611.
OMAIMIRTTE.

Enzyme and pathway databases

UniPathwayUPA00254; UER00365.

Family and domain databases

HAMAPMF_01109. OTCase.
InterProIPR006132. Asp/Orn_carbamoyltranf_P-bd.
IPR006130. Asp/Orn_carbamoylTrfase.
IPR006131. Asp_carbamoyltransf_Asp/Orn-bd.
IPR002292. Orn/put_carbamltrans.
IPR024904. Orn_carbamltrans.
[Graphical view]
PfamPF00185. OTCace. 1 hit.
PF02729. OTCace_N. 1 hit.
[Graphical view]
PRINTSPR00100. AOTCASE.
PR00102. OTCASE.
SUPFAMSSF53671. Asp/Orn_carbamoyltranf. 1 hit.
TIGRFAMsTIGR00658. orni_carb_tr. 1 hit.
PROSITEPS00097. CARBAMOYLTRANSFERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5TGR2_BIFAV
AccessionPrimary (citable) accession number: D5TGR2
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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