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D5TG50

- D5TG50_BIFAV

UniProt

D5TG50 - D5TG50_BIFAV

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Protein
Xylose isomerase
Gene
xylA, BalV_0488
Organism
Bifidobacterium animalis subsp. lactis (strain V9)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei103 – 1031 By similarityUniRule annotation
Active sitei106 – 1061 By similarityUniRule annotation
Metal bindingi234 – 2341Magnesium 1 By similarityUniRule annotation
Metal bindingi270 – 2701Magnesium 1 By similarityUniRule annotation
Metal bindingi270 – 2701Magnesium 2 By similarityUniRule annotation
Metal bindingi273 – 2731Magnesium 2 By similarityUniRule annotation
Metal bindingi298 – 2981Magnesium 1 By similarityUniRule annotation
Metal bindingi309 – 3091Magnesium 2 By similarityUniRule annotation
Metal bindingi311 – 3111Magnesium 2 By similarityUniRule annotation
Metal bindingi342 – 3421Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciBANI573236:GL92-511-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:BalV_0488Imported
OrganismiBifidobacterium animalis subsp. lactis (strain V9)Imported
Taxonomic identifieri573236 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium
ProteomesiUP000007461: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliD5TG50.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000252293.
KOiK01805.
OMAiLFHAHIG.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5TG50-1 [UniParc]FASTAAdd to Basket

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MAGLWDIDKI EYVGRTKGLQ EGLGFQYYDA DKVVAGKKMK DWLRFGVAWW    50
HTFDAPLTDP FGDGTAQRPW DGKYSDPMDN ALAKVDYAFE FFTKLGAEYF 100
CFHDRDIAPE GDTLRETNAN LDRVVDKIEE NMQSTGVKLL WNTSSLFTNP 150
RFVAGASTSP FADVYAYAAA QLKHSLEIGK RLGAENYVFW GGREGYENLW 200
VTDMKREQEH MAKFFHMCAD YAKQIGMDAQ FLIEPKAKEP TTHQYDFDAA 250
TACNFLRAYD LIDVFKLNLE GNHANLAGHT YQHEIRVARD NGVLGSLDAN 300
QGDMLLGWDL DEFPTNLYET TSVMWEVLDE GQIGPHGGLN FDAKPRRTSF 350
SAEDLFRAHI AGMDSFAAGL LVADKMHQDK YIEDLVANRY GSYDSGIGKS 400
IDDGTATLES LNDYAIDMPQ SEIIASTHPD HLEDVKATIN NYIIDALANA 450
Length:450
Mass (Da):50,562
Last modified:July 13, 2010 - v1
Checksum:i12AA2B7016389BA8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001892 Genomic DNA. Translation: ADG33076.1.
RefSeqiYP_005580855.1. NC_017217.1.

Genome annotation databases

EnsemblBacteriaiADG33076; ADG33076; BalV_0488.
GeneIDi12170948.
KEGGiblv:BalV_0488.
PATRICi42763330. VBIBifAni108068_0512.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001892 Genomic DNA. Translation: ADG33076.1 .
RefSeqi YP_005580855.1. NC_017217.1.

3D structure databases

ProteinModelPortali D5TG50.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG33076 ; ADG33076 ; BalV_0488 .
GeneIDi 12170948.
KEGGi blv:BalV_0488.
PATRICi 42763330. VBIBifAni108068_0512.

Phylogenomic databases

HOGENOMi HOG000252293.
KOi K01805.
OMAi LFHAHIG.

Enzyme and pathway databases

BioCyci BANI573236:GL92-511-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9."
    Sun Z., Chen X., Wang J., Gao P., Zhou Z., Ren Y., Sun T., Wang L., Meng H., Chen W., Zhang H.
    J. Bacteriol. 192:4080-4081(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: V9Imported.

Entry informationi

Entry nameiD5TG50_BIFAV
AccessioniPrimary (citable) accession number: D5TG50
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 11, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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