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D5TG50 (D5TG50_BIFAV) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length450 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1031 By similarity HAMAP-Rule MF_00455
Active site1061 By similarity HAMAP-Rule MF_00455
Metal binding2341Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2731Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2981Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3091Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3111Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3421Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
D5TG50 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 12AA2B7016389BA8

FASTA45050,562
        10         20         30         40         50         60 
MAGLWDIDKI EYVGRTKGLQ EGLGFQYYDA DKVVAGKKMK DWLRFGVAWW HTFDAPLTDP 

        70         80         90        100        110        120 
FGDGTAQRPW DGKYSDPMDN ALAKVDYAFE FFTKLGAEYF CFHDRDIAPE GDTLRETNAN 

       130        140        150        160        170        180 
LDRVVDKIEE NMQSTGVKLL WNTSSLFTNP RFVAGASTSP FADVYAYAAA QLKHSLEIGK 

       190        200        210        220        230        240 
RLGAENYVFW GGREGYENLW VTDMKREQEH MAKFFHMCAD YAKQIGMDAQ FLIEPKAKEP 

       250        260        270        280        290        300 
TTHQYDFDAA TACNFLRAYD LIDVFKLNLE GNHANLAGHT YQHEIRVARD NGVLGSLDAN 

       310        320        330        340        350        360 
QGDMLLGWDL DEFPTNLYET TSVMWEVLDE GQIGPHGGLN FDAKPRRTSF SAEDLFRAHI 

       370        380        390        400        410        420 
AGMDSFAAGL LVADKMHQDK YIEDLVANRY GSYDSGIGKS IDDGTATLES LNDYAIDMPQ 

       430        440        450 
SEIIASTHPD HLEDVKATIN NYIIDALANA 

« Hide

References

[1]"Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9."
Sun Z., Chen X., Wang J., Gao P., Zhou Z., Ren Y., Sun T., Wang L., Meng H., Chen W., Zhang H.
J. Bacteriol. 192:4080-4081(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: V9 EMBL ADG33076.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001892 Genomic DNA. Translation: ADG33076.1.
RefSeqYP_005580855.1. NC_017217.1.

3D structure databases

ProteinModelPortalD5TG50.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG33076; ADG33076; BalV_0488.
GeneID12170948.
KEGGblv:BalV_0488.
PATRIC42763330. VBIBifAni108068_0512.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000252293.
KOK01805.
OMALFHAHIG.

Enzyme and pathway databases

BioCycBANI573236:GL92-511-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5TG50_BIFAV
AccessionPrimary (citable) accession number: D5TG50
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 11, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)