Skip Header

Contribute Send feedback
Read comments (?) or add your own

D5TFJ1 (D5TFJ1_BIFAV) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Ribonuclease PH EMBL ADG32867.1
Gene names
Ordered Locus Names:BalV_0279
OrganismBifidobacterium animalis subsp. lactis (strain V9) [Complete proteome] [HAMAP]
Taxonomic identifier573236 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. SAAS SAAS002381

Sequences

Sequence LengthMass (Da)Tools
D5TFJ1 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 7C11B12CF1E2851D

FASTA23024,935
        10         20         30         40         50         60 
MRITRAFTDV PEGSVLIECG NTRVMCTATF TDTVPRWRKD SGLGWVTAEY SMLPRATAQR 

        70         80         90        100        110        120 
TDRESVRGKV GGRTHEISRL IGRCLRGVID MKALGENTIQ MDCDVLQADG GTRTASITGA 

       130        140        150        160        170        180 
HVALVDALNW AKQNGKIKSV KNVLLDSVSA VSVGVIDGEP MLDLPYVEDS RAMTDMNVAM 

       190        200        210        220        230 
TGSGKFVEIQ GTAEHRPFSR NELGVLLDLA TKGNRELQAA QQAALDADLR

« Hide

References

[1]"Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9."
Sun Z., Chen X., Wang J., Gao P., Zhou Z., Ren Y., Sun T., Wang L., Meng H., Chen W., Zhang H.
J. Bacteriol. 192:4080-4081(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: V9 EMBL ADG32867.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001892 Genomic DNA. Translation: ADG32867.1.
RefSeqYP_005580646.1. NC_017217.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG32867; ADG32867; BalV_0279.
GeneID12170723.
KEGGblv:BalV_0279.
PATRIC42762854. VBIBifAni108068_0290.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229516.
KOK00989.
OMAMLPRATG.

Family and domain databases

HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5TFJ1_BIFAV
AccessionPrimary (citable) accession number: D5TFJ1
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: May 1, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info