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D5SZ58

- D5SZ58_PLAL2

UniProt

D5SZ58 - D5SZ58_PLAL2

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Protein
Submitted name:

Uncharacterized protein

Gene

Plim_4148

Organism
Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi58 – 581Copper; via tele nitrogenCombined sources
Metal bindingi60 – 601Copper; via tele nitrogenCombined sources
Metal bindingi65 – 651CopperCombined sources
Metal bindingi67 – 671CopperCombined sources
Metal bindingi101 – 1011Copper; via tele nitrogenCombined sources

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

CopperCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciPLIM521674:GKE7-4216-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:Plim_4148Imported
OrganismiPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)Imported
Taxonomic identifieri521674 [NCBI]
Taxonomic lineageiBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces
ProteomesiUP000002220: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4H7LX-ray2.45A/B1-154[»]
ProteinModelPortaliD5SZ58.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000106005.
OMAiRTHYHRE.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D5SZ58-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTESTKDSPS AAMPQMISLS EIEAVACPCG WAQRAFGHDA GTSVSVHYTQ
60 70 80 90 100
ITKAARTHYH REHQEIYVVL DHAAHATIEL NGQSYPLTKL LAISIPPLVR
110 120 130 140 150
HRIVGEATII NIVSPPFDPA DEWFDSSDMN CDEMNADMNT ADTSSALPME

IHHV
Length:154
Mass (Da):16,925
Last modified:July 13, 2010 - v1
Checksum:iAEE30DDBA229B2C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001744 Genomic DNA. Translation: ADG69959.1.
RefSeqiWP_013112390.1. NC_014148.1.
YP_003632158.1. NC_014148.1.

Genome annotation databases

EnsemblBacteriaiADG69959; ADG69959; Plim_4148.
GeneIDi9140868.
KEGGiplm:Plim_4148.
PATRICi38245658. VBIPlaLim6916_5057.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001744 Genomic DNA. Translation: ADG69959.1 .
RefSeqi WP_013112390.1. NC_014148.1.
YP_003632158.1. NC_014148.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4H7L X-ray 2.45 A/B 1-154 [» ]
ProteinModelPortali D5SZ58.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG69959 ; ADG69959 ; Plim_4148 .
GeneIDi 9140868.
KEGGi plm:Plim_4148.
PATRICi 38245658. VBIPlaLim6916_5057.

Phylogenomic databases

HOGENOMi HOG000106005.
OMAi RTHYHRE.

Enzyme and pathway databases

BioCyci PLIM521674:GKE7-4216-MONOMER.

Family and domain databases

Gene3Di 2.60.120.10. 1 hit.
InterProi IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view ]
SUPFAMi SSF51182. SSF51182. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290Imported.
  2. "Crystal structure of Plim_4148 protein from Planctomyces limnophilus."
    Midwest Center for Structural Genomics (MCSG)
    Michalska K., Bigelow L., Bruno C.J.P., Moser C., Bearden J., Joachimiak A.
    Submitted (SEP-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) IN COMPLEX WITH COPPER.

Entry informationi

Entry nameiD5SZ58_PLAL2
AccessioniPrimary (citable) accession number: D5SZ58
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: January 7, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.