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D5SZ58 (D5SZ58_PLAL2) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Plim_4148 EMBL ADG69959.1
OrganismPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) [Complete proteome] [HAMAP] EMBL ADG69959.1
Taxonomic identifier521674 [NCBI]
Taxonomic lineageBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces

Protein attributes

Sequence length154 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Ontologies

Keywords
   LigandCopper PDB 4H7L
Metal-binding PDB 4H7L
   Technical term3D-structure PDB 4H7L
Complete proteome
Gene Ontology (GO)
   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding581Copper; via tele nitrogen PDB 4H7L
Metal binding601Copper; via tele nitrogen PDB 4H7L
Metal binding651Copper PDB 4H7L
Metal binding671Copper PDB 4H7L
Metal binding1011Copper; via tele nitrogen PDB 4H7L

Sequences

Sequence LengthMass (Da)Tools
D5SZ58 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: AEE30DDBA229B2C4

FASTA15416,925
        10         20         30         40         50         60 
MTESTKDSPS AAMPQMISLS EIEAVACPCG WAQRAFGHDA GTSVSVHYTQ ITKAARTHYH 

        70         80         90        100        110        120 
REHQEIYVVL DHAAHATIEL NGQSYPLTKL LAISIPPLVR HRIVGEATII NIVSPPFDPA 

       130        140        150 
DEWFDSSDMN CDEMNADMNT ADTSSALPME IHHV 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Planctomyces limnophilus type strain (Mu 290)."
Labutti K., Sikorski J., Schneider S., Nolan M., Lucas S., Glavina Del Rio T., Tice H., Cheng J.F., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M. expand/collapse author list , Hauser L., Chang Y.J., Jeffries C.D., Tindall B.J., Rohde M., Goker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus A.
Stand. Genomic Sci. 3:47-56(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290.
[2]"Crystal structure of Plim_4148 protein from Planctomyces limnophilus."
Midwest Center for Structural Genomics (MCSG)
Michalska K., Bigelow L., Bruno C.J.P., Moser C., Bearden J., Joachimiak A.
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) IN COMPLEX WITH COPPER.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001744 Genomic DNA. Translation: ADG69959.1.
RefSeqYP_003632158.1. NC_014148.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4H7LX-ray2.45A/B1-154[»]
ProteinModelPortalD5SZ58.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG69959; ADG69959; Plim_4148.
GeneID9140868.
KEGGplm:Plim_4148.
PATRIC38245658. VBIPlaLim6916_5057.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000106005.

Enzyme and pathway databases

BioCycPLIM521674:GKE7-4216-MONOMER.

Family and domain databases

Gene3D2.60.120.10. 1 hit.
InterProIPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
SUPFAMSSF51182. SSF51182. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5SZ58_PLAL2
AccessionPrimary (citable) accession number: D5SZ58
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 11, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)