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D5SW38 (D5SW38_PLAL2) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Plim_1490 EMBL ADG67323.1
OrganismPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) [Complete proteome] [HAMAP] EMBL ADG67323.1
Taxonomic identifier521674 [NCBI]
Taxonomic lineageBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces

Protein attributes

Sequence length338 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Ontologies

Keywords
   DomainSignal EMBL ADG67323.1
   Technical term3D-structure PDB 4JWO
Complete proteome
Gene Ontology (GO)
   Biological_processtransport

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential EMBL ADG67323.1
Chain27 – 338312 Potential EMBL ADG67323.1
PRO_5000587219

Regions

Region65 – 662Sulfate 1 binding PDB 4JWO

Sites

Binding site951Sulfate 1 PDB 4JWO
Binding site1131Sulfate 1 PDB 4JWO
Binding site1911Sulfate 2 PDB 4JWO
Binding site2191Sulfate 2 PDB 4JWO
Binding site2221Sulfate 3 PDB 4JWO
Binding site2421Sulfate 3 PDB 4JWO
Binding site3171Sulfate 3 PDB 4JWO

Sequences

Sequence LengthMass (Da)Tools
D5SW38 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 9501AA306FDA1AC0

FASTA33836,422
        10         20         30         40         50         60 
MPFLRPRYVL VLIALFGTVC GSLSGCVQKK SADQAASTSE KTNSSTEGMN AATPSISGTI 

        70         80         90        100        110        120 
AVDGSSTVFP ISQAVAEEFE GKFPEVKLTV AMSGTGGGFK KFIAEEIDVT GASRPITEKE 

       130        140        150        160        170        180 
AAECKAKGID YVEFQVAIDG LTVVINPANT FAECMTVAEL NKIWAADSKV SKWSEVREGW 

       190        200        210        220        230        240 
PDEPIQLFGA DTASGTFDYF TEVINGKAKS SRSDYTANSN DNILVQGVVD SKGALGYFGY 

       250        260        270        280        290        300 
AYFAENASKL KAVKISDGKK AVCVEPTPAT IESGEYTPLS RPLFIYTTKA KLKRPEVAEF 

       310        320        330 
IKFLLSEKGD QLVEEVKYIK VPKSVKETMQ QRLADALK 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Planctomyces limnophilus type strain (Mu 290)."
Labutti K., Sikorski J., Schneider S., Nolan M., Lucas S., Glavina Del Rio T., Tice H., Cheng J.F., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M. expand/collapse author list , Hauser L., Chang Y.J., Jeffries C.D., Tindall B.J., Rohde M., Goker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus A.
Stand. Genomic Sci. 3:47-56(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290.
[2]"The crystal structure of a possible phosphate binding protein from Planctomyces limnophilus DSM 3776."
Tan K., Gu M., Endres M., Joachimiak A.
Submitted (MAR-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001744 Genomic DNA. Translation: ADG67323.1.
RefSeqYP_003629522.1. NC_014148.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4JWOX-ray1.60A1-338[»]
ProteinModelPortalD5SW38.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG67323; ADG67323; Plim_1490.
GeneID9138187.
KEGGplm:Plim_1490.
PATRIC38239096. VBIPlaLim6916_1797.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000074254.
KOK02040.
OMAEIMEVRI.

Enzyme and pathway databases

BioCycPLIM521674:GKE7-1534-MONOMER.

Family and domain databases

InterProIPR024370. PBP_domain.
IPR011862. Phos-bd.
[Graphical view]
PfamPF12727. PBP_like. 1 hit.
[Graphical view]
TIGRFAMsTIGR02136. ptsS_2. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5SW38_PLAL2
AccessionPrimary (citable) accession number: D5SW38
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 11, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)