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D5SR75 (D5SR75_PLAL2) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564

Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564
Ordered Locus Names:Plim_2745 EMBL ADG68568.1
OrganismPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) [Complete proteome] [HAMAP] EMBL ADG68568.1
Taxonomic identifier521674 [NCBI]
Taxonomic lineageBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces

Protein attributes

Sequence length239 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
D5SR75 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: 101AE28B38257AEE

FASTA23925,900
        10         20         30         40         50         60 
MRHDGRQPDE LRPIRIQRQF TKVAPGSVLI SAGDTTLLVT ASIDETLPPW KAADPAAQKG 

        70         80         90        100        110        120 
WLTAEYCMLP GSTSPRKRRE REKVDGRSTE IQRLIGRSLR ACVDFETLGP RTIMIDVEVL 

       130        140        150        160        170        180 
QADGGTRTLG ITGGYIALCD AIATLGDKVS KDRPVLTTSI AAVSVGISHG TPILDLDYIE 

       190        200        210        220        230 
DSQAEVDLNV VMTGSGEFIE IQGTAEGRSF TRAQLDQQLA LAEKGIRQLM ELQQAALKG 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001744 Genomic DNA. Translation: ADG68568.1.
RefSeqYP_003630767.1. NC_014148.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG68568; ADG68568; Plim_2745.
GeneID9139457.
KEGGplm:Plim_2745.
PATRIC38242214. VBIPlaLim6916_3342.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229516.
KOK00989.
OMAKGQGWVT.

Enzyme and pathway databases

BioCycPLIM521674:GKE7-2805-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5SR75_PLAL2
AccessionPrimary (citable) accession number: D5SR75
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: April 16, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)