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D5SMT1

- D5SMT1_PLAL2

UniProt

D5SMT1 - D5SMT1_PLAL2

Protein
Submitted name:

Amidohydrolase 2

Gene

Plim_2160

Organism
Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-galacturonate = D-tagaturonate.SAAS annotation
    D-glucuronate = D-fructuronate.SAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi25 – 251Zinc; via tele nitrogenImported
    Metal bindingi27 – 271Zinc; via tele nitrogenImported
    Metal bindingi374 – 3741ZincImported

    GO - Molecular functioni

    1. glucuronate isomerase activity Source: InterPro
    2. hydrolase activity Source: UniProtKB-KW
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. glucuronate catabolic process Source: InterPro

    Keywords - Molecular functioni

    HydrolaseImported, IsomeraseSAAS annotation

    Keywords - Ligandi

    Metal-bindingImported, ZincImported

    Enzyme and pathway databases

    BioCyciPLIM521674:GKE7-2211-MONOMER.
    UniPathwayiUPA00246.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Amidohydrolase 2Imported
    Gene namesi
    Ordered Locus Names:Plim_2160Imported
    OrganismiPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)Imported
    Taxonomic identifieri521674 [NCBI]
    Taxonomic lineageiBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces
    ProteomesiUP000002220: Chromosome

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4I6VX-ray2.14A/B/C1-431[»]
    ProteinModelPortaliD5SMT1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000106015.
    KOiK01812.
    OMAiHSHINPH.

    Family and domain databases

    Gene3Di1.10.2020.10. 1 hit.
    InterProiIPR003766. Uronate_isomerase.
    IPR023177. Uronate_isomerase_dom2.
    [Graphical view]
    PfamiPF02614. UxaC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5SMT1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIATKSSPID QLCAQLDEIV LIDPHSHINP HAAASKNLGD ILGYHYFTEL    50
    AHSAGMPREV IEAPGITAKE KVGRIVEGLA HLDNTIQVKW LIELCERFFG 100
    FQDDRLTPDN WEALYDHSEK LMSAPDWEQT VLQKSQLEAV FLTNDFDDPL 150
    TGFDTKKYIP CLRTDDLVFH LQKPEVRQRL AKATGFDCAT PAKLIHAIGQ 200
    LFTHFVSHGA KACAISLPPD FEPTPVSHVD AEGPLRAAYA GHVLTTEQSQ 250
    ILSRFVFWTI AEFCSEHHLP FDLMIGVNRR VYESGVYQGQ DLFDQRVSLY 300
    QYRRLFNAFP RVKFPISVLA HASNMELVSY AWIFPNVIAN GHWWYSNIPA 350
    FIEPDCRSRL EAIPRNKNIG YYSDMYKLEF GWPKFQMYRR VLAKVLFEDF 400
    VVGRHWSEER AVELGRQILR GNVETIFSGA C 431
    Length:431
    Mass (Da):49,248
    Last modified:July 13, 2010 - v1
    Checksum:iC9B7ADEF986F9720
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001744 Genomic DNA. Translation: ADG67986.1.
    RefSeqiWP_013110417.1. NC_014148.1.
    YP_003630185.1. NC_014148.1.

    Genome annotation databases

    EnsemblBacteriaiADG67986; ADG67986; Plim_2160.
    GeneIDi9138864.
    KEGGiplm:Plim_2160.
    PATRICi38240712. VBIPlaLim6916_2599.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001744 Genomic DNA. Translation: ADG67986.1 .
    RefSeqi WP_013110417.1. NC_014148.1.
    YP_003630185.1. NC_014148.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4I6V X-ray 2.14 A/B/C 1-431 [» ]
    ProteinModelPortali D5SMT1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADG67986 ; ADG67986 ; Plim_2160 .
    GeneIDi 9138864.
    KEGGi plm:Plim_2160.
    PATRICi 38240712. VBIPlaLim6916_2599.

    Phylogenomic databases

    HOGENOMi HOG000106015.
    KOi K01812.
    OMAi HSHINPH.

    Enzyme and pathway databases

    UniPathwayi UPA00246 .
    BioCyci PLIM521674:GKE7-2211-MONOMER.

    Family and domain databases

    Gene3Di 1.10.2020.10. 1 hit.
    InterProi IPR003766. Uronate_isomerase.
    IPR023177. Uronate_isomerase_dom2.
    [Graphical view ]
    Pfami PF02614. UxaC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290Imported.
    2. "The crystal structure of an amidohydrolase 2 from Planctomyces limnophilus DSM 3776."
      Fan Y., Tan K., Wu R., Bearden J., Joachimiak A.
      Submitted (NOV-2012) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.14 ANGSTROMS) IN COMPLEX WITH ZINC.

    Entry informationi

    Entry nameiD5SMT1_PLAL2
    AccessioniPrimary (citable) accession number: D5SMT1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 13, 2010
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3