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Protein

Uronate isomerase

Gene

Plim_2160

Organism
Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) (Planctomyces limnophilus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

D-galacturonate = D-tagaturonate.SAAS annotation
D-glucuronate = D-fructuronate.SAAS annotation

Pathway:ipentose and glucuronate interconversion

This protein is involved in the pathway pentose and glucuronate interconversion, which is part of Carbohydrate metabolism.SAAS annotation
View all proteins of this organism that are known to be involved in the pathway pentose and glucuronate interconversion and in Carbohydrate metabolism.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi25 – 251Zinc; via tele nitrogenCombined sources
Metal bindingi27 – 271Zinc; via tele nitrogenCombined sources
Metal bindingi374 – 3741ZincCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported, IsomeraseSAAS annotation

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciPLIM521674:GKE7-2211-MONOMER.
UniPathwayiUPA00246.

Names & Taxonomyi

Protein namesi
Recommended name:
Uronate isomeraseSAAS annotation (EC:5.3.1.12SAAS annotation)
Gene namesi
Ordered Locus Names:Plim_2160Imported
OrganismiPlanctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) (Planctomyces limnophilus)Imported
Taxonomic identifieri521674 [NCBI]
Taxonomic lineageiBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctopirus
ProteomesiUP000002220 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi521674.Plim_2160.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4I6VX-ray2.14A/B/C1-431[»]
ProteinModelPortaliD5SMT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000106015.
KOiK01812.
OMAiHSHINPH.

Family and domain databases

Gene3Di1.10.2020.10. 1 hit.
InterProiIPR003766. Uronate_isomerase.
IPR023177. Uronate_isomerase_dom2.
[Graphical view]
PfamiPF02614. UxaC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5SMT1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIATKSSPID QLCAQLDEIV LIDPHSHINP HAAASKNLGD ILGYHYFTEL
60 70 80 90 100
AHSAGMPREV IEAPGITAKE KVGRIVEGLA HLDNTIQVKW LIELCERFFG
110 120 130 140 150
FQDDRLTPDN WEALYDHSEK LMSAPDWEQT VLQKSQLEAV FLTNDFDDPL
160 170 180 190 200
TGFDTKKYIP CLRTDDLVFH LQKPEVRQRL AKATGFDCAT PAKLIHAIGQ
210 220 230 240 250
LFTHFVSHGA KACAISLPPD FEPTPVSHVD AEGPLRAAYA GHVLTTEQSQ
260 270 280 290 300
ILSRFVFWTI AEFCSEHHLP FDLMIGVNRR VYESGVYQGQ DLFDQRVSLY
310 320 330 340 350
QYRRLFNAFP RVKFPISVLA HASNMELVSY AWIFPNVIAN GHWWYSNIPA
360 370 380 390 400
FIEPDCRSRL EAIPRNKNIG YYSDMYKLEF GWPKFQMYRR VLAKVLFEDF
410 420 430
VVGRHWSEER AVELGRQILR GNVETIFSGA C
Length:431
Mass (Da):49,248
Last modified:July 13, 2010 - v1
Checksum:iC9B7ADEF986F9720
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001744 Genomic DNA. Translation: ADG67986.1.
RefSeqiWP_013110417.1. NC_014148.1.

Genome annotation databases

EnsemblBacteriaiADG67986; ADG67986; Plim_2160.
KEGGiplm:Plim_2160.
PATRICi38240712. VBIPlaLim6916_2599.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001744 Genomic DNA. Translation: ADG67986.1.
RefSeqiWP_013110417.1. NC_014148.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4I6VX-ray2.14A/B/C1-431[»]
ProteinModelPortaliD5SMT1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi521674.Plim_2160.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG67986; ADG67986; Plim_2160.
KEGGiplm:Plim_2160.
PATRICi38240712. VBIPlaLim6916_2599.

Phylogenomic databases

HOGENOMiHOG000106015.
KOiK01812.
OMAiHSHINPH.

Enzyme and pathway databases

UniPathwayiUPA00246.
BioCyciPLIM521674:GKE7-2211-MONOMER.

Family and domain databases

Gene3Di1.10.2020.10. 1 hit.
InterProiIPR003766. Uronate_isomerase.
IPR023177. Uronate_isomerase_dom2.
[Graphical view]
PfamiPF02614. UxaC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290Imported.
  2. "The crystal structure of an amidohydrolase 2 from Planctomyces limnophilus DSM 3776."
    Fan Y., Tan K., Wu R., Bearden J., Joachimiak A.
    Submitted (NOV-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.14 ANGSTROMS) IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiD5SMT1_PLAL2
AccessioniPrimary (citable) accession number: D5SMT1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: July 22, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.