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D5SMT1 (D5SMT1_PLAL2) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length431 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

D-galacturonate = D-tagaturonate. SAAS SAAS023177

D-glucuronate = D-fructuronate. SAAS SAAS023177

Pathway

Carbohydrate metabolism; pentose and glucuronate interconversion. SAAS SAAS023177

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding251Zinc; via tele nitrogen PDB 4I6V
Metal binding271Zinc; via tele nitrogen PDB 4I6V
Metal binding3741Zinc PDB 4I6V
Binding site1041Acetate PDB 4I6V
Binding site4061Acetate PDB 4I6V

Sequences

Sequence LengthMass (Da)Tools
D5SMT1 [UniParc].

Last modified July 13, 2010. Version 1.
Checksum: C9B7ADEF986F9720

FASTA43149,248
        10         20         30         40         50         60 
MIATKSSPID QLCAQLDEIV LIDPHSHINP HAAASKNLGD ILGYHYFTEL AHSAGMPREV 

        70         80         90        100        110        120 
IEAPGITAKE KVGRIVEGLA HLDNTIQVKW LIELCERFFG FQDDRLTPDN WEALYDHSEK 

       130        140        150        160        170        180 
LMSAPDWEQT VLQKSQLEAV FLTNDFDDPL TGFDTKKYIP CLRTDDLVFH LQKPEVRQRL 

       190        200        210        220        230        240 
AKATGFDCAT PAKLIHAIGQ LFTHFVSHGA KACAISLPPD FEPTPVSHVD AEGPLRAAYA 

       250        260        270        280        290        300 
GHVLTTEQSQ ILSRFVFWTI AEFCSEHHLP FDLMIGVNRR VYESGVYQGQ DLFDQRVSLY 

       310        320        330        340        350        360 
QYRRLFNAFP RVKFPISVLA HASNMELVSY AWIFPNVIAN GHWWYSNIPA FIEPDCRSRL 

       370        380        390        400        410        420 
EAIPRNKNIG YYSDMYKLEF GWPKFQMYRR VLAKVLFEDF VVGRHWSEER AVELGRQILR 

       430 
GNVETIFSGA C 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Planctomyces limnophilus type strain (Mu 290)."
Labutti K., Sikorski J., Schneider S., Nolan M., Lucas S., Glavina Del Rio T., Tice H., Cheng J.F., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M. expand/collapse author list , Hauser L., Chang Y.J., Jeffries C.D., Tindall B.J., Rohde M., Goker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus A.
Stand. Genomic Sci. 3:47-56(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290.
[2]"The crystal structure of an amidohydrolase 2 from Planctomyces limnophilus DSM 3776."
Fan Y., Tan K., Wu R., Bearden J., Joachimiak A.
Submitted (NOV-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.14 ANGSTROMS) IN COMPLEX WITH ACETATE AND ZINC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001744 Genomic DNA. Translation: ADG67986.1.
RefSeqYP_003630185.1. NC_014148.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4I6VX-ray2.14A/B/C1-431[»]
ProteinModelPortalD5SMT1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADG67986; ADG67986; Plim_2160.
GeneID9138864.
KEGGplm:Plim_2160.
PATRIC38240712. VBIPlaLim6916_2599.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000106015.
KOK01812.
OMAHSHINPH.

Enzyme and pathway databases

BioCycPLIM521674:GKE7-2211-MONOMER.
UniPathwayUPA00246.

Family and domain databases

Gene3D1.10.2020.10. 1 hit.
InterProIPR003766. Uronate_isomerase.
IPR023177. Uronate_isomerase_dom2.
[Graphical view]
PfamPF02614. UxaC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5SMT1_PLAL2
AccessionPrimary (citable) accession number: D5SMT1
Entry history
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 11, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)