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D5SMT1

- D5SMT1_PLAL2

UniProt

D5SMT1 - D5SMT1_PLAL2

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Protein
Submitted name:

Amidohydrolase 2

Gene

Plim_2160

Organism
Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

D-galacturonate = D-tagaturonate.SAAS annotation
D-glucuronate = D-fructuronate.SAAS annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi25 – 251Zinc; via tele nitrogenImported
Metal bindingi27 – 271Zinc; via tele nitrogenImported
Metal bindingi374 – 3741ZincImported

GO - Molecular functioni

  1. glucuronate isomerase activity Source: InterPro
  2. hydrolase activity Source: UniProtKB-KW
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. glucuronate catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported, IsomeraseSAAS annotation

Keywords - Ligandi

Metal-bindingImported, ZincImported

Enzyme and pathway databases

BioCyciPLIM521674:GKE7-2211-MONOMER.
UniPathwayiUPA00246.

Names & Taxonomyi

Protein namesi
Submitted name:
Amidohydrolase 2Imported
Gene namesi
Ordered Locus Names:Plim_2160Imported
OrganismiPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)Imported
Taxonomic identifieri521674 [NCBI]
Taxonomic lineageiBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces
ProteomesiUP000002220: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4I6VX-ray2.14A/B/C1-431[»]
ProteinModelPortaliD5SMT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000106015.
KOiK01812.
OMAiHSHINPH.

Family and domain databases

Gene3Di1.10.2020.10. 1 hit.
InterProiIPR003766. Uronate_isomerase.
IPR023177. Uronate_isomerase_dom2.
[Graphical view]
PfamiPF02614. UxaC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5SMT1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MIATKSSPID QLCAQLDEIV LIDPHSHINP HAAASKNLGD ILGYHYFTEL
60 70 80 90 100
AHSAGMPREV IEAPGITAKE KVGRIVEGLA HLDNTIQVKW LIELCERFFG
110 120 130 140 150
FQDDRLTPDN WEALYDHSEK LMSAPDWEQT VLQKSQLEAV FLTNDFDDPL
160 170 180 190 200
TGFDTKKYIP CLRTDDLVFH LQKPEVRQRL AKATGFDCAT PAKLIHAIGQ
210 220 230 240 250
LFTHFVSHGA KACAISLPPD FEPTPVSHVD AEGPLRAAYA GHVLTTEQSQ
260 270 280 290 300
ILSRFVFWTI AEFCSEHHLP FDLMIGVNRR VYESGVYQGQ DLFDQRVSLY
310 320 330 340 350
QYRRLFNAFP RVKFPISVLA HASNMELVSY AWIFPNVIAN GHWWYSNIPA
360 370 380 390 400
FIEPDCRSRL EAIPRNKNIG YYSDMYKLEF GWPKFQMYRR VLAKVLFEDF
410 420 430
VVGRHWSEER AVELGRQILR GNVETIFSGA C
Length:431
Mass (Da):49,248
Last modified:July 13, 2010 - v1
Checksum:iC9B7ADEF986F9720
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001744 Genomic DNA. Translation: ADG67986.1.
RefSeqiYP_003630185.1. NC_014148.1.

Genome annotation databases

EnsemblBacteriaiADG67986; ADG67986; Plim_2160.
GeneIDi9138864.
KEGGiplm:Plim_2160.
PATRICi38240712. VBIPlaLim6916_2599.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001744 Genomic DNA. Translation: ADG67986.1 .
RefSeqi YP_003630185.1. NC_014148.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4I6V X-ray 2.14 A/B/C 1-431 [» ]
ProteinModelPortali D5SMT1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADG67986 ; ADG67986 ; Plim_2160 .
GeneIDi 9138864.
KEGGi plm:Plim_2160.
PATRICi 38240712. VBIPlaLim6916_2599.

Phylogenomic databases

HOGENOMi HOG000106015.
KOi K01812.
OMAi HSHINPH.

Enzyme and pathway databases

UniPathwayi UPA00246 .
BioCyci PLIM521674:GKE7-2211-MONOMER.

Family and domain databases

Gene3Di 1.10.2020.10. 1 hit.
InterProi IPR003766. Uronate_isomerase.
IPR023177. Uronate_isomerase_dom2.
[Graphical view ]
Pfami PF02614. UxaC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43296 / DSM 3776 / IFAM 1008 / 290Imported.
  2. "The crystal structure of an amidohydrolase 2 from Planctomyces limnophilus DSM 3776."
    Fan Y., Tan K., Wu R., Bearden J., Joachimiak A.
    Submitted (NOV-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.14 ANGSTROMS) IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiD5SMT1_PLAL2
AccessioniPrimary (citable) accession number: D5SMT1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: October 29, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3