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D5MK17 (D5MK17_9BACT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufB EMBL CBE67600.1
Synonyms:tuf HAMAP-Rule MF_00118
ORF Names:DAMO_0524 EMBL CBE67600.1, DAMO_0537 EMBL CBE67613.1
OrganismCandidatus Methylomirabilis oxyfera [Complete proteome] EMBL CBE67600.1
Taxonomic identifier671143 [NCBI]
Taxonomic lineageBacteriacandidate division NC10Candidatus Methylomirabilis

Protein attributes

Sequence length400 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding82 – 865GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding137 – 1404GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D5MK17 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 8F68E320F5F01FA1

FASTA40043,861
        10         20         30         40         50         60 
MAKAKFERTK EHMNIGTIGH IDHGKTTLTA AITKVLHAAN AKVAFVPFDQ IDKAPEEKER 

        70         80         90        100        110        120 
GITINIAHVE YETAKRHYAH VDCPGHADYI KNMITGAAQM DGAILVVAAS EGPMPQTREH 

       130        140        150        160        170        180 
ILLARQVNVP NLVVFLNKVD LVDDPELLEL VELEVRELLT AYNFPGDDIP FVRGSALKAL 

       190        200        210        220        230        240 
ETGSGDRSNP ASTPIFELMD AVDAYFPAPV RVLDKPFLMP IEDVFSISGR GTVVTGRVER 

       250        260        270        280        290        300 
GIIKVSDEVE LVGIRDTQRT VVTGVEMFRK LLDQGQAGDN VGLLLRGTKR EEVERGQVVA 

       310        320        330        340        350        360 
KPGSIPPHTR FKAEAYILTK EEGGRHTPFF NGYRPQFYFR TTDVTGVCTL PAGTEMVMPG 

       370        380        390        400 
DNVSLAVELI QPIAMEKELR FAIREGGRTV GAGVVSEVLE 

« Hide

References

[1]Genoscope - CEA
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Nitrite-driven anaerobic methane oxidation by oxygenic bacteria."
Ettwig K.F., Butler M.K., Le Paslier D., Pelletier E., Mangenot S., Kuypers M.M.M., Schreiber F., Dutilh B.E., Zedelius J., de Beer D., Gloerich J., Wessels H.J.C.T., van Allen T., Luesken F., Wu M., van de Pas-Schoonen K.T., Op den Camp H.J.M., Janssen-Megens E.M. expand/collapse author list , Francoijs K-J., Stunnenberg H., Weissenbach J., Jetten M.S.M., Strous M.
Nature 464:543-548(2010)
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP565575 Genomic DNA. Translation: CBE67600.1.
FP565575 Genomic DNA. Translation: CBE67613.1.
RefSeqYP_003205441.1. NC_013260.1.
YP_003205454.1. NC_013260.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID13098751.
13099136.
KEGGmox:DAMO_0524.
mox:DAMO_0537.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5MK17_9BACT
AccessionPrimary (citable) accession number: D5MK17
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 16, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)