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D5MK17

- D5MK17_9BACT

UniProt

D5MK17 - D5MK17_9BACT

Protein

Elongation factor Tu

Gene

tufB

Organism
Candidatus Methylomirabilis oxyfera
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi19 – 268GTPUniRule annotation
    Nucleotide bindingi82 – 865GTPUniRule annotation
    Nucleotide bindingi137 – 1404GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-HAMAP
    3. translation elongation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Elongation factorUniRule annotationImported

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciCMET671143-WGS:GSII-479-MONOMER.
    CMET671143-WGS:GSII-493-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Short name:
    EF-TuUniRule annotation
    Gene namesi
    Name:tufBImported
    Synonyms:tufUniRule annotation
    ORF Names:DAMO_0524Imported, DAMO_0537Imported
    OrganismiCandidatus Methylomirabilis oxyferaImported
    Taxonomic identifieri671143 [NCBI]
    Taxonomic lineageiBacteriacandidate division NC10Candidatus Methylomirabilis
    ProteomesiUP000006898: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily.UniRule annotation
    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    KOiK02358.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5MK17-1 [UniParc]FASTAAdd to Basket

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    MAKAKFERTK EHMNIGTIGH IDHGKTTLTA AITKVLHAAN AKVAFVPFDQ    50
    IDKAPEEKER GITINIAHVE YETAKRHYAH VDCPGHADYI KNMITGAAQM 100
    DGAILVVAAS EGPMPQTREH ILLARQVNVP NLVVFLNKVD LVDDPELLEL 150
    VELEVRELLT AYNFPGDDIP FVRGSALKAL ETGSGDRSNP ASTPIFELMD 200
    AVDAYFPAPV RVLDKPFLMP IEDVFSISGR GTVVTGRVER GIIKVSDEVE 250
    LVGIRDTQRT VVTGVEMFRK LLDQGQAGDN VGLLLRGTKR EEVERGQVVA 300
    KPGSIPPHTR FKAEAYILTK EEGGRHTPFF NGYRPQFYFR TTDVTGVCTL 350
    PAGTEMVMPG DNVSLAVELI QPIAMEKELR FAIREGGRTV GAGVVSEVLE 400
    Length:400
    Mass (Da):43,861
    Last modified:June 15, 2010 - v1
    Checksum:i8F68E320F5F01FA1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565575 Genomic DNA. Translation: CBE67600.1.
    FP565575 Genomic DNA. Translation: CBE67613.1.
    RefSeqiWP_015743116.1. NC_013260.1.
    YP_003205441.1. NC_013260.1.
    YP_003205454.1. NC_013260.1.

    Genome annotation databases

    GeneIDi13098751.
    13099136.
    KEGGimox:DAMO_0524.
    mox:DAMO_0537.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565575 Genomic DNA. Translation: CBE67600.1 .
    FP565575 Genomic DNA. Translation: CBE67613.1 .
    RefSeqi WP_015743116.1. NC_013260.1.
    YP_003205441.1. NC_013260.1.
    YP_003205454.1. NC_013260.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 13098751.
    13099136.
    KEGGi mox:DAMO_0524.
    mox:DAMO_0537.

    Phylogenomic databases

    KOi K02358.

    Enzyme and pathway databases

    BioCyci CMET671143-WGS:GSII-479-MONOMER.
    CMET671143-WGS:GSII-493-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Genoscope - CEA
      Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiD5MK17_9BACT
    AccessioniPrimary (citable) accession number: D5MK17
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3