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D5H8C2 (D5H8C2_SALRM) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.2.4.2 EMBL CBH24277.1
Gene names
Name:odhA EMBL CBH24277.1
Ordered Locus Names:SRM_01356 EMBL CBH24277.1
OrganismSalinibacter ruber (strain M8) [Complete proteome] [HAMAP] EMBL CBH24277.1
Taxonomic identifier761659 [NCBI]
Taxonomic lineageBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter

Protein attributes

Sequence length1243 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D5H8C2 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: DC3E669C8A0DD58D

FASTA1,243138,925
        10         20         30         40         50         60 
MSSLGFNTGY IEELYKQYQD DPDSVSESWR EFFADYDPDA SFIPVDRTTA GDGEATTPPE 

        70         80         90        100        110        120 
EPTEPEPTDR DSSPDASPAP PAEADDGVVE PLRPASAPAV DEDQADVTAM TGPSAKVVEN 

       130        140        150        160        170        180 
MEDSLGIPTA TSARTIPVKL LDENRNLLND YQKQVGGEKV SYTHIIAYAM VQAMQKYPDM 

       190        200        210        220        230        240 
NTTFRRNEDG TPEHVKPDQI NLGLAIDVER RGERTLLVPN LKDAGSLSFA EFLGTYNNIV 

       250        260        270        280        290        300 
GRALDGDLDL SDFQGTTATL TNPGMIGTSM SVARLMPGQG VIMGAGAIDF PPEYRGYDSE 

       310        320        330        340        350        360 
VASKAGVSPV MTLTSTYDHR VIQGATSGAF LNHIEELLTG NHDFYQRIFS DLGVPYQPFR 

       370        380        390        400        410        420 
MATDSTPQLG RSRPQDELDM TEKQAAVLQL IRAYRVRGHL QADINPLGYE WQYHEELDPA 

       430        440        450        460        470        480 
TYGLTVWDLD REFITGGLGG EDKLPLREIL SILRKSYTSK VGTAFMHISD PEEKTWIQNR 

       490        500        510        520        530        540 
IEPMRNAGSP SEEERHRIVQ KLNAAEAFER FLHTKYIGHK RFSLEGSETM IPLIDTLLSD 

       550        560        570        580        590        600 
AADEGVEEVV MGMAHRGRLN VLANIIGKPY EEIFSKFEGN IDPNTTQGSG DVKYHLGAEG 

       610        620        630        640        650        660 
DVTSPDGNEI SVTLASNPSH LEAVNPVVEG MSRAKQNLLR DEHPEAAEDD YHDAVMPLLI 

       670        680        690        700        710        720 
HGDAGFAGQG VVAETLNLSK LRGYTTGGTV HLVINNQIGF TTPPGDARSS TYATDLARAI 

       730        740        750        760        770        780 
EAPIFHVNGD DPETCVRIAR LAFEYRQRFN KDVVIDMMCY RVHGHNEGDE PTFTQPLLYE 

       790        800        810        820        830        840 
KIEEKRSPRK LYTEMLLRRG EIEPDEAEQM LDDYRGRLQE AFERTKDLEE KDAEEALEER 

       850        860        870        880        890        900 
VQRTADDRLP RVDTTAEREH LERVVEVLTD FPDDFNVHRK LERLFGKRDD LFYDEKRIDW 

       910        920        930        940        950        960 
AFSETLAFGS LLQEGTRVRL SGQDSRRATF SQRHAVLIDQ ETGAEYTPLN NLTDDQERLL 

       970        980        990       1000       1010       1020 
IYDSLLSEYA VAGFEYGYSV VDKNALTCWE AQFGDFANGA EIVWDQFVSA AEEKWGQTSG 

      1030       1040       1050       1060       1070       1080 
LVALLPHAYE GQGPEHSSAR LERFLQLCAE QNMIVANFST PANYFHALRR QVKRDVKKPL 

      1090       1100       1110       1120       1130       1140 
IIMTPKSLLR HPKCVSTPED LMEGGVQEII PAEADPAGTT RHILCSGKVY YDLVTALEDS 

      1150       1160       1170       1180       1190       1200 
DRRDEIAITR LEQFYPFPAS DLQEELERYS EADETVWVQE EPQNMGAWSF VSPRFETLLD 

      1210       1220       1230       1240 
EIHGPCEQRI QYVGRPASAS PATGSAKVHD REQEQLVGDA LGL 

« Hide

References

« Hide 'large scale' references
[1]"Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
ISME J. -:0-0(2010)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: M8.
[2]"Genome sequence of Salinibacter ruber M8."
Genoscope
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M8.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP565814 Genomic DNA. Translation: CBH24277.1.
RefSeqYP_003571229.1. NC_014032.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH24277; CBH24277; SRM_01356.
GeneID8996583.
KEGGsrm:SRM_01356.
PATRIC35490532. VBISalRub49863_1265.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000259587.
KOK00164.

Enzyme and pathway databases

BioCycSRUB761659:GHC6-1371-MONOMER.

Family and domain databases

Gene3D3.30.559.10. 1 hit.
3.40.50.970. 2 hits.
InterProIPR001078. 2-oxoacid_DH_actylTfrase.
IPR011603. 2oxoglutarate_DH_E1.
IPR023213. CAT-like_dom.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERPTHR23152. PTHR23152. 1 hit.
PfamPF00198. 2-oxoacid_dh. 1 hit.
PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMSSF52518. SSF52518. 2 hits.
TIGRFAMsTIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5H8C2_SALRM
AccessionPrimary (citable) accession number: D5H8C2
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: June 11, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)