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D5H8C2

- D5H8C2_SALRM

UniProt

D5H8C2 - D5H8C2_SALRM

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Protein
Submitted name:

2-oxoglutarate dehydrogenase E1 component

Gene

odhA

Organism
Salinibacter ruber (strain M8)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: UniProtKB-EC
  2. thiamine pyrophosphate binding Source: InterPro
  3. transferase activity, transferring acyl groups Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciSRUB761659:GHC6-1371-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
2-oxoglutarate dehydrogenase E1 componentImported (EC:1.2.4.2Imported)
Gene namesi
Name:odhAImported
Ordered Locus Names:SRM_01356Imported
OrganismiSalinibacter ruber (strain M8)Imported
Taxonomic identifieri761659 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
ProteomesiUP000000933: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000259587.
KOiK00164.

Family and domain databases

Gene3Di3.30.559.10. 1 hit.
3.40.50.970. 2 hits.
InterProiIPR001078. 2-oxoacid_DH_actylTfrase.
IPR011603. 2oxoglutarate_DH_E1.
IPR023213. CAT-like_dom.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00198. 2-oxoacid_dh. 1 hit.
PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

D5H8C2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSSLGFNTGY IEELYKQYQD DPDSVSESWR EFFADYDPDA SFIPVDRTTA
60 70 80 90 100
GDGEATTPPE EPTEPEPTDR DSSPDASPAP PAEADDGVVE PLRPASAPAV
110 120 130 140 150
DEDQADVTAM TGPSAKVVEN MEDSLGIPTA TSARTIPVKL LDENRNLLND
160 170 180 190 200
YQKQVGGEKV SYTHIIAYAM VQAMQKYPDM NTTFRRNEDG TPEHVKPDQI
210 220 230 240 250
NLGLAIDVER RGERTLLVPN LKDAGSLSFA EFLGTYNNIV GRALDGDLDL
260 270 280 290 300
SDFQGTTATL TNPGMIGTSM SVARLMPGQG VIMGAGAIDF PPEYRGYDSE
310 320 330 340 350
VASKAGVSPV MTLTSTYDHR VIQGATSGAF LNHIEELLTG NHDFYQRIFS
360 370 380 390 400
DLGVPYQPFR MATDSTPQLG RSRPQDELDM TEKQAAVLQL IRAYRVRGHL
410 420 430 440 450
QADINPLGYE WQYHEELDPA TYGLTVWDLD REFITGGLGG EDKLPLREIL
460 470 480 490 500
SILRKSYTSK VGTAFMHISD PEEKTWIQNR IEPMRNAGSP SEEERHRIVQ
510 520 530 540 550
KLNAAEAFER FLHTKYIGHK RFSLEGSETM IPLIDTLLSD AADEGVEEVV
560 570 580 590 600
MGMAHRGRLN VLANIIGKPY EEIFSKFEGN IDPNTTQGSG DVKYHLGAEG
610 620 630 640 650
DVTSPDGNEI SVTLASNPSH LEAVNPVVEG MSRAKQNLLR DEHPEAAEDD
660 670 680 690 700
YHDAVMPLLI HGDAGFAGQG VVAETLNLSK LRGYTTGGTV HLVINNQIGF
710 720 730 740 750
TTPPGDARSS TYATDLARAI EAPIFHVNGD DPETCVRIAR LAFEYRQRFN
760 770 780 790 800
KDVVIDMMCY RVHGHNEGDE PTFTQPLLYE KIEEKRSPRK LYTEMLLRRG
810 820 830 840 850
EIEPDEAEQM LDDYRGRLQE AFERTKDLEE KDAEEALEER VQRTADDRLP
860 870 880 890 900
RVDTTAEREH LERVVEVLTD FPDDFNVHRK LERLFGKRDD LFYDEKRIDW
910 920 930 940 950
AFSETLAFGS LLQEGTRVRL SGQDSRRATF SQRHAVLIDQ ETGAEYTPLN
960 970 980 990 1000
NLTDDQERLL IYDSLLSEYA VAGFEYGYSV VDKNALTCWE AQFGDFANGA
1010 1020 1030 1040 1050
EIVWDQFVSA AEEKWGQTSG LVALLPHAYE GQGPEHSSAR LERFLQLCAE
1060 1070 1080 1090 1100
QNMIVANFST PANYFHALRR QVKRDVKKPL IIMTPKSLLR HPKCVSTPED
1110 1120 1130 1140 1150
LMEGGVQEII PAEADPAGTT RHILCSGKVY YDLVTALEDS DRRDEIAITR
1160 1170 1180 1190 1200
LEQFYPFPAS DLQEELERYS EADETVWVQE EPQNMGAWSF VSPRFETLLD
1210 1220 1230 1240
EIHGPCEQRI QYVGRPASAS PATGSAKVHD REQEQLVGDA LGL
Length:1,243
Mass (Da):138,925
Last modified:June 15, 2010 - v1
Checksum:iDC3E669C8A0DD58D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP565814 Genomic DNA. Translation: CBH24277.1.
RefSeqiYP_003571229.1. NC_014032.1.

Genome annotation databases

EnsemblBacteriaiCBH24277; CBH24277; SRM_01356.
GeneIDi8996583.
KEGGisrm:SRM_01356.
PATRICi35490532. VBISalRub49863_1265.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP565814 Genomic DNA. Translation: CBH24277.1 .
RefSeqi YP_003571229.1. NC_014032.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBH24277 ; CBH24277 ; SRM_01356 .
GeneIDi 8996583.
KEGGi srm:SRM_01356.
PATRICi 35490532. VBISalRub49863_1265.

Phylogenomic databases

HOGENOMi HOG000259587.
KOi K00164.

Enzyme and pathway databases

BioCyci SRUB761659:GHC6-1371-MONOMER.

Family and domain databases

Gene3Di 3.30.559.10. 1 hit.
3.40.50.970. 2 hits.
InterProi IPR001078. 2-oxoacid_DH_actylTfrase.
IPR011603. 2oxoglutarate_DH_E1.
IPR023213. CAT-like_dom.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view ]
PANTHERi PTHR23152. PTHR23152. 1 hit.
Pfami PF00198. 2-oxoacid_dh. 1 hit.
PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view ]
PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTi SM00861. Transket_pyr. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 2 hits.
TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
    Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
    ISME J. -:0-0(2010)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: M8.
  2. "Genome sequence of Salinibacter ruber M8."
    Genoscope
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M8Imported.

Entry informationi

Entry nameiD5H8C2_SALRM
AccessioniPrimary (citable) accession number: D5H8C2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 29, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3