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D5H8C2

- D5H8C2_SALRM

UniProt

D5H8C2 - D5H8C2_SALRM

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Protein
Submitted name:

2-oxoglutarate dehydrogenase E1 component

Gene
odhA, SRM_01356
Organism
Salinibacter ruber (strain M8)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: UniProtKB-EC
  2. thiamine pyrophosphate binding Source: InterPro
  3. transferase activity, transferring acyl groups Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciSRUB761659:GHC6-1371-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
2-oxoglutarate dehydrogenase E1 componentImported (EC:1.2.4.2Imported)
Gene namesi
Name:odhAImported
Ordered Locus Names:SRM_01356Imported
OrganismiSalinibacter ruber (strain M8)Imported
Taxonomic identifieri761659 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
ProteomesiUP000000933: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000259587.
KOiK00164.

Family and domain databases

Gene3Di3.30.559.10. 1 hit.
3.40.50.970. 2 hits.
InterProiIPR001078. 2-oxoacid_DH_actylTfrase.
IPR011603. 2oxoglutarate_DH_E1.
IPR023213. CAT-like_dom.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00198. 2-oxoacid_dh. 1 hit.
PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

D5H8C2-1 [UniParc]FASTAAdd to Basket

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MSSLGFNTGY IEELYKQYQD DPDSVSESWR EFFADYDPDA SFIPVDRTTA     50
GDGEATTPPE EPTEPEPTDR DSSPDASPAP PAEADDGVVE PLRPASAPAV 100
DEDQADVTAM TGPSAKVVEN MEDSLGIPTA TSARTIPVKL LDENRNLLND 150
YQKQVGGEKV SYTHIIAYAM VQAMQKYPDM NTTFRRNEDG TPEHVKPDQI 200
NLGLAIDVER RGERTLLVPN LKDAGSLSFA EFLGTYNNIV GRALDGDLDL 250
SDFQGTTATL TNPGMIGTSM SVARLMPGQG VIMGAGAIDF PPEYRGYDSE 300
VASKAGVSPV MTLTSTYDHR VIQGATSGAF LNHIEELLTG NHDFYQRIFS 350
DLGVPYQPFR MATDSTPQLG RSRPQDELDM TEKQAAVLQL IRAYRVRGHL 400
QADINPLGYE WQYHEELDPA TYGLTVWDLD REFITGGLGG EDKLPLREIL 450
SILRKSYTSK VGTAFMHISD PEEKTWIQNR IEPMRNAGSP SEEERHRIVQ 500
KLNAAEAFER FLHTKYIGHK RFSLEGSETM IPLIDTLLSD AADEGVEEVV 550
MGMAHRGRLN VLANIIGKPY EEIFSKFEGN IDPNTTQGSG DVKYHLGAEG 600
DVTSPDGNEI SVTLASNPSH LEAVNPVVEG MSRAKQNLLR DEHPEAAEDD 650
YHDAVMPLLI HGDAGFAGQG VVAETLNLSK LRGYTTGGTV HLVINNQIGF 700
TTPPGDARSS TYATDLARAI EAPIFHVNGD DPETCVRIAR LAFEYRQRFN 750
KDVVIDMMCY RVHGHNEGDE PTFTQPLLYE KIEEKRSPRK LYTEMLLRRG 800
EIEPDEAEQM LDDYRGRLQE AFERTKDLEE KDAEEALEER VQRTADDRLP 850
RVDTTAEREH LERVVEVLTD FPDDFNVHRK LERLFGKRDD LFYDEKRIDW 900
AFSETLAFGS LLQEGTRVRL SGQDSRRATF SQRHAVLIDQ ETGAEYTPLN 950
NLTDDQERLL IYDSLLSEYA VAGFEYGYSV VDKNALTCWE AQFGDFANGA 1000
EIVWDQFVSA AEEKWGQTSG LVALLPHAYE GQGPEHSSAR LERFLQLCAE 1050
QNMIVANFST PANYFHALRR QVKRDVKKPL IIMTPKSLLR HPKCVSTPED 1100
LMEGGVQEII PAEADPAGTT RHILCSGKVY YDLVTALEDS DRRDEIAITR 1150
LEQFYPFPAS DLQEELERYS EADETVWVQE EPQNMGAWSF VSPRFETLLD 1200
EIHGPCEQRI QYVGRPASAS PATGSAKVHD REQEQLVGDA LGL 1243
Length:1,243
Mass (Da):138,925
Last modified:June 15, 2010 - v1
Checksum:iDC3E669C8A0DD58D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP565814 Genomic DNA. Translation: CBH24277.1.
RefSeqiWP_013061704.1. NC_014032.1.
YP_003571229.1. NC_014032.1.

Genome annotation databases

EnsemblBacteriaiCBH24277; CBH24277; SRM_01356.
GeneIDi8996583.
KEGGisrm:SRM_01356.
PATRICi35490532. VBISalRub49863_1265.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP565814 Genomic DNA. Translation: CBH24277.1 .
RefSeqi WP_013061704.1. NC_014032.1.
YP_003571229.1. NC_014032.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBH24277 ; CBH24277 ; SRM_01356 .
GeneIDi 8996583.
KEGGi srm:SRM_01356.
PATRICi 35490532. VBISalRub49863_1265.

Phylogenomic databases

HOGENOMi HOG000259587.
KOi K00164.

Enzyme and pathway databases

BioCyci SRUB761659:GHC6-1371-MONOMER.

Family and domain databases

Gene3Di 3.30.559.10. 1 hit.
3.40.50.970. 2 hits.
InterProi IPR001078. 2-oxoacid_DH_actylTfrase.
IPR011603. 2oxoglutarate_DH_E1.
IPR023213. CAT-like_dom.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view ]
PANTHERi PTHR23152. PTHR23152. 1 hit.
Pfami PF00198. 2-oxoacid_dh. 1 hit.
PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view ]
PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTi SM00861. Transket_pyr. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 2 hits.
TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
    Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
    ISME J. -:0-0(2010)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: M8.
  2. "Genome sequence of Salinibacter ruber M8."
    Genoscope
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M8.

Entry informationi

Entry nameiD5H8C2_SALRM
AccessioniPrimary (citable) accession number: D5H8C2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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