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D5H8C2

- D5H8C2_SALRM

UniProt

D5H8C2 - D5H8C2_SALRM

Protein
Submitted name:

2-oxoglutarate dehydrogenase E1 component

Gene

odhA

Organism
Salinibacter ruber (strain M8)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: UniProtKB-EC
    2. thiamine pyrophosphate binding Source: InterPro
    3. transferase activity, transferring acyl groups Source: InterPro

    GO - Biological processi

    1. tricarboxylic acid cycle Source: InterPro

    Keywords - Molecular functioni

    OxidoreductaseImported

    Enzyme and pathway databases

    BioCyciSRUB761659:GHC6-1371-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    2-oxoglutarate dehydrogenase E1 componentImported (EC:1.2.4.2Imported)
    Gene namesi
    Name:odhAImported
    Ordered Locus Names:SRM_01356Imported
    OrganismiSalinibacter ruber (strain M8)Imported
    Taxonomic identifieri761659 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
    ProteomesiUP000000933: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000259587.
    KOiK00164.

    Family and domain databases

    Gene3Di3.30.559.10. 1 hit.
    3.40.50.970. 2 hits.
    InterProiIPR001078. 2-oxoacid_DH_actylTfrase.
    IPR011603. 2oxoglutarate_DH_E1.
    IPR023213. CAT-like_dom.
    IPR001017. DH_E1.
    IPR029061. THDP-binding.
    IPR005475. Transketolase-like_Pyr-bd.
    [Graphical view]
    PANTHERiPTHR23152. PTHR23152. 1 hit.
    PfamiPF00198. 2-oxoacid_dh. 1 hit.
    PF00676. E1_dh. 1 hit.
    PF02779. Transket_pyr. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
    SMARTiSM00861. Transket_pyr. 1 hit.
    [Graphical view]
    SUPFAMiSSF52518. SSF52518. 2 hits.
    TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D5H8C2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSLGFNTGY IEELYKQYQD DPDSVSESWR EFFADYDPDA SFIPVDRTTA     50
    GDGEATTPPE EPTEPEPTDR DSSPDASPAP PAEADDGVVE PLRPASAPAV 100
    DEDQADVTAM TGPSAKVVEN MEDSLGIPTA TSARTIPVKL LDENRNLLND 150
    YQKQVGGEKV SYTHIIAYAM VQAMQKYPDM NTTFRRNEDG TPEHVKPDQI 200
    NLGLAIDVER RGERTLLVPN LKDAGSLSFA EFLGTYNNIV GRALDGDLDL 250
    SDFQGTTATL TNPGMIGTSM SVARLMPGQG VIMGAGAIDF PPEYRGYDSE 300
    VASKAGVSPV MTLTSTYDHR VIQGATSGAF LNHIEELLTG NHDFYQRIFS 350
    DLGVPYQPFR MATDSTPQLG RSRPQDELDM TEKQAAVLQL IRAYRVRGHL 400
    QADINPLGYE WQYHEELDPA TYGLTVWDLD REFITGGLGG EDKLPLREIL 450
    SILRKSYTSK VGTAFMHISD PEEKTWIQNR IEPMRNAGSP SEEERHRIVQ 500
    KLNAAEAFER FLHTKYIGHK RFSLEGSETM IPLIDTLLSD AADEGVEEVV 550
    MGMAHRGRLN VLANIIGKPY EEIFSKFEGN IDPNTTQGSG DVKYHLGAEG 600
    DVTSPDGNEI SVTLASNPSH LEAVNPVVEG MSRAKQNLLR DEHPEAAEDD 650
    YHDAVMPLLI HGDAGFAGQG VVAETLNLSK LRGYTTGGTV HLVINNQIGF 700
    TTPPGDARSS TYATDLARAI EAPIFHVNGD DPETCVRIAR LAFEYRQRFN 750
    KDVVIDMMCY RVHGHNEGDE PTFTQPLLYE KIEEKRSPRK LYTEMLLRRG 800
    EIEPDEAEQM LDDYRGRLQE AFERTKDLEE KDAEEALEER VQRTADDRLP 850
    RVDTTAEREH LERVVEVLTD FPDDFNVHRK LERLFGKRDD LFYDEKRIDW 900
    AFSETLAFGS LLQEGTRVRL SGQDSRRATF SQRHAVLIDQ ETGAEYTPLN 950
    NLTDDQERLL IYDSLLSEYA VAGFEYGYSV VDKNALTCWE AQFGDFANGA 1000
    EIVWDQFVSA AEEKWGQTSG LVALLPHAYE GQGPEHSSAR LERFLQLCAE 1050
    QNMIVANFST PANYFHALRR QVKRDVKKPL IIMTPKSLLR HPKCVSTPED 1100
    LMEGGVQEII PAEADPAGTT RHILCSGKVY YDLVTALEDS DRRDEIAITR 1150
    LEQFYPFPAS DLQEELERYS EADETVWVQE EPQNMGAWSF VSPRFETLLD 1200
    EIHGPCEQRI QYVGRPASAS PATGSAKVHD REQEQLVGDA LGL 1243
    Length:1,243
    Mass (Da):138,925
    Last modified:June 15, 2010 - v1
    Checksum:iDC3E669C8A0DD58D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565814 Genomic DNA. Translation: CBH24277.1.
    RefSeqiWP_013061704.1. NC_014032.1.
    YP_003571229.1. NC_014032.1.

    Genome annotation databases

    EnsemblBacteriaiCBH24277; CBH24277; SRM_01356.
    GeneIDi8996583.
    KEGGisrm:SRM_01356.
    PATRICi35490532. VBISalRub49863_1265.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565814 Genomic DNA. Translation: CBH24277.1 .
    RefSeqi WP_013061704.1. NC_014032.1.
    YP_003571229.1. NC_014032.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBH24277 ; CBH24277 ; SRM_01356 .
    GeneIDi 8996583.
    KEGGi srm:SRM_01356.
    PATRICi 35490532. VBISalRub49863_1265.

    Phylogenomic databases

    HOGENOMi HOG000259587.
    KOi K00164.

    Enzyme and pathway databases

    BioCyci SRUB761659:GHC6-1371-MONOMER.

    Family and domain databases

    Gene3Di 3.30.559.10. 1 hit.
    3.40.50.970. 2 hits.
    InterProi IPR001078. 2-oxoacid_DH_actylTfrase.
    IPR011603. 2oxoglutarate_DH_E1.
    IPR023213. CAT-like_dom.
    IPR001017. DH_E1.
    IPR029061. THDP-binding.
    IPR005475. Transketolase-like_Pyr-bd.
    [Graphical view ]
    PANTHERi PTHR23152. PTHR23152. 1 hit.
    Pfami PF00198. 2-oxoacid_dh. 1 hit.
    PF00676. E1_dh. 1 hit.
    PF02779. Transket_pyr. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
    SMARTi SM00861. Transket_pyr. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52518. SSF52518. 2 hits.
    TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
      Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
      ISME J. -:0-0(2010)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: M8.
    2. "Genome sequence of Salinibacter ruber M8."
      Genoscope
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: M8Imported.

    Entry informationi

    Entry nameiD5H8C2_SALRM
    AccessioniPrimary (citable) accession number: D5H8C2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3