D5H879 (D5H879_SALRM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
D-ala D-ala ligase C-terminus superfamily EMBL CBH24234.1
EC=6.3.2.4 EMBL CBH24234.1

Gene names

Name:	ddl EMBL CBH24234.1
Ordered Locus Names:	SRM_01313 EMBL CBH24234.1

Organism

Salinibacter ruber (strain M8) [Complete proteome] [HAMAP] EMBL CBH24234.1

Taxonomic identifier

761659 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidetes Order II. Incertae sedis › Rhodothermaceae › Salinibacter › Salinibacter ruber

Protein attributes

Sequence length	333 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CBH24234.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	peptidoglycan biosynthetic process Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro D-alanine-D-alanine ligase activity Inferred from electronic annotation. Source: EC metal ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5H879 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: FA4B703FBB34025D	FASTA	333	36,024
	10 20 30 40 50 60 MRIGLLYDTF DAYSWANDDP PDADAEYEPI ETVDTLAAAV EHLGHTPVRV GTAADLRDRL 70 80 90 100 110 120 GGGLSLDAAI NITEGAHSRN REAYVPILLE MAGVPCLGSD ALTLSVTLDK AWTKDLVAAA 130 140 150 160 170 180 DIPTPPHRVY SAPEAVDADD LPGAFPLFVK PRYEGTSKGI TPDSKVEDVA ALRGAVDRIT 190 200 210 220 230 240 TTYDQDAVAE PFVAGGGEFT VAVVGHDPPE ALPVLQRGVE PTTGLGLHVL EHRGAPTADR 250 260 270 280 290 300 DWEYELRGTL APALEDRLQA LSRRAFDTLD CRDFARADFR VDGDGTPWFL EINPLPTFKP 310 320 330 DDTFAIVAEL MGRDYVDYLA EVFGRGLRRL GLS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains." Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J. ISME J. -:0-0(2010) Cited for: NUCLEOTIDE SEQUENCE. Strain: M8.
[2]	"Genome sequence of Salinibacter ruber M8." Genoscope Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: M8.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FP565814 Genomic DNA. Translation: CBH24234.1.
RefSeq	YP_003571186.1. NC_014032.1.
3D structure databases
ProteinModelPortal	D5H879.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBH24234; CBH24234; SRM_01313.
GeneID	8994522.
KEGG	srm:SRM_01313.
PATRIC	35490448. VBISalRub49863_1223.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000011592.
KO	K01921.
PhylomeDB	D5H879.
Family and domain databases
Gene3D	3.30.1490.20. 1 hit. 3.30.470.20. 1 hit.
InterPro	IPR011761. ATP-grasp. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR005905. D_ala_D_ala. IPR011095. Dala_Dala_lig_C. [Graphical view]
PANTHER	PTHR23132. PTHR23132. 1 hit.
Pfam	PF07478. Dala_Dala_lig_C. 1 hit. [Graphical view]
PROSITE	PS50975. ATP_GRASP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5H879_SALRM

Accession

Primary (citable) accession number: D5H879

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)