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D5H879

- D5H879_SALRM

UniProt

D5H879 - D5H879_SALRM

Protein
Submitted name:

D-ala D-ala ligase C-terminus superfamily

Gene

ddl

Organism
Salinibacter ruber (strain M8)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
    3. metal ion binding Source: InterPro

    GO - Biological processi

    1. peptidoglycan biosynthetic process Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSRUB761659:GHC6-1328-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    D-ala D-ala ligase C-terminus superfamilyImported (EC:6.3.2.4Imported)
    Gene namesi
    Name:ddlImported
    Ordered Locus Names:SRM_01313Imported
    OrganismiSalinibacter ruber (strain M8)Imported
    Taxonomic identifieri761659 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
    ProteomesiUP000000933: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: InterPro

    Structurei

    3D structure databases

    ProteinModelPortaliD5H879.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000011592.
    KOiK01921.
    PhylomeDBiD5H879.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProiIPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    [Graphical view]
    PANTHERiPTHR23132. PTHR23132. 1 hit.
    PfamiPF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view]
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5H879-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRIGLLYDTF DAYSWANDDP PDADAEYEPI ETVDTLAAAV EHLGHTPVRV    50
    GTAADLRDRL GGGLSLDAAI NITEGAHSRN REAYVPILLE MAGVPCLGSD 100
    ALTLSVTLDK AWTKDLVAAA DIPTPPHRVY SAPEAVDADD LPGAFPLFVK 150
    PRYEGTSKGI TPDSKVEDVA ALRGAVDRIT TTYDQDAVAE PFVAGGGEFT 200
    VAVVGHDPPE ALPVLQRGVE PTTGLGLHVL EHRGAPTADR DWEYELRGTL 250
    APALEDRLQA LSRRAFDTLD CRDFARADFR VDGDGTPWFL EINPLPTFKP 300
    DDTFAIVAEL MGRDYVDYLA EVFGRGLRRL GLS 333
    Length:333
    Mass (Da):36,024
    Last modified:June 15, 2010 - v1
    Checksum:iFA4B703FBB34025D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565814 Genomic DNA. Translation: CBH24234.1.
    RefSeqiWP_013061666.1. NC_014032.1.
    YP_003571186.1. NC_014032.1.

    Genome annotation databases

    EnsemblBacteriaiCBH24234; CBH24234; SRM_01313.
    GeneIDi8994522.
    KEGGisrm:SRM_01313.
    PATRICi35490448. VBISalRub49863_1223.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565814 Genomic DNA. Translation: CBH24234.1 .
    RefSeqi WP_013061666.1. NC_014032.1.
    YP_003571186.1. NC_014032.1.

    3D structure databases

    ProteinModelPortali D5H879.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBH24234 ; CBH24234 ; SRM_01313 .
    GeneIDi 8994522.
    KEGGi srm:SRM_01313.
    PATRICi 35490448. VBISalRub49863_1223.

    Phylogenomic databases

    HOGENOMi HOG000011592.
    KOi K01921.
    PhylomeDBi D5H879.

    Enzyme and pathway databases

    BioCyci SRUB761659:GHC6-1328-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProi IPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    [Graphical view ]
    PANTHERi PTHR23132. PTHR23132. 1 hit.
    Pfami PF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view ]
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
      Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
      ISME J. -:0-0(2010)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: M8.
    2. "Genome sequence of Salinibacter ruber M8."
      Genoscope
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: M8Imported.

    Entry informationi

    Entry nameiD5H879_SALRM
    AccessioniPrimary (citable) accession number: D5H879
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3