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Protein
Submitted name:

Ddl protein

Gene

ddl

Organism
Salinibacter ruber (strain M8)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
  3. metal ion binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSRUB761659:GHC6-1328-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ddl proteinImported (EC:6.3.2.4Imported)
Gene namesi
Name:ddlImported
Ordered Locus Names:SRM_01313Imported
OrganismiSalinibacter ruber (strain M8)Imported
Taxonomic identifieri761659 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
ProteomesiUP000000933 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000011592.
KOiK01921.
PhylomeDBiD5H879.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
[Graphical view]
PANTHERiPTHR23132. PTHR23132. 1 hit.
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
PROSITEiPS50975. ATP_GRASP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5H879-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRIGLLYDTF DAYSWANDDP PDADAEYEPI ETVDTLAAAV EHLGHTPVRV
60 70 80 90 100
GTAADLRDRL GGGLSLDAAI NITEGAHSRN REAYVPILLE MAGVPCLGSD
110 120 130 140 150
ALTLSVTLDK AWTKDLVAAA DIPTPPHRVY SAPEAVDADD LPGAFPLFVK
160 170 180 190 200
PRYEGTSKGI TPDSKVEDVA ALRGAVDRIT TTYDQDAVAE PFVAGGGEFT
210 220 230 240 250
VAVVGHDPPE ALPVLQRGVE PTTGLGLHVL EHRGAPTADR DWEYELRGTL
260 270 280 290 300
APALEDRLQA LSRRAFDTLD CRDFARADFR VDGDGTPWFL EINPLPTFKP
310 320 330
DDTFAIVAEL MGRDYVDYLA EVFGRGLRRL GLS
Length:333
Mass (Da):36,024
Last modified:June 15, 2010 - v1
Checksum:iFA4B703FBB34025D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP565814 Genomic DNA. Translation: CBH24234.1.
RefSeqiWP_013061666.1. NC_014032.1.
YP_003571186.1. NC_014032.1.

Genome annotation databases

EnsemblBacteriaiCBH24234; CBH24234; SRM_01313.
KEGGisrm:SRM_01313.
PATRICi35490448. VBISalRub49863_1223.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP565814 Genomic DNA. Translation: CBH24234.1.
RefSeqiWP_013061666.1. NC_014032.1.
YP_003571186.1. NC_014032.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBH24234; CBH24234; SRM_01313.
KEGGisrm:SRM_01313.
PATRICi35490448. VBISalRub49863_1223.

Phylogenomic databases

HOGENOMiHOG000011592.
KOiK01921.
PhylomeDBiD5H879.

Enzyme and pathway databases

BioCyciSRUB761659:GHC6-1328-MONOMER.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
[Graphical view]
PANTHERiPTHR23132. PTHR23132. 1 hit.
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
PROSITEiPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
    Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
    ISME J. -:0-0(2010)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: M8.
  2. "Genome sequence of Salinibacter ruber M8."
    Genoscope
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M8Imported.

Entry informationi

Entry nameiD5H879_SALRM
AccessioniPrimary (citable) accession number: D5H879
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 29, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.