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D5H879 (D5H879_SALRM) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.3.2.4 EMBL CBH24234.1
Gene names
Name:ddl EMBL CBH24234.1
Ordered Locus Names:SRM_01313 EMBL CBH24234.1
OrganismSalinibacter ruber (strain M8) [Complete proteome] [HAMAP] EMBL CBH24234.1
Taxonomic identifier761659 [NCBI]
Taxonomic lineageBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter

Protein attributes

Sequence length333 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CBH24234.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpeptidoglycan biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

D-alanine-D-alanine ligase activity

Inferred from electronic annotation. Source: UniProtKB-EC

metal ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5H879 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: FA4B703FBB34025D

FASTA33336,024
        10         20         30         40         50         60 
MRIGLLYDTF DAYSWANDDP PDADAEYEPI ETVDTLAAAV EHLGHTPVRV GTAADLRDRL 

        70         80         90        100        110        120 
GGGLSLDAAI NITEGAHSRN REAYVPILLE MAGVPCLGSD ALTLSVTLDK AWTKDLVAAA 

       130        140        150        160        170        180 
DIPTPPHRVY SAPEAVDADD LPGAFPLFVK PRYEGTSKGI TPDSKVEDVA ALRGAVDRIT 

       190        200        210        220        230        240 
TTYDQDAVAE PFVAGGGEFT VAVVGHDPPE ALPVLQRGVE PTTGLGLHVL EHRGAPTADR 

       250        260        270        280        290        300 
DWEYELRGTL APALEDRLQA LSRRAFDTLD CRDFARADFR VDGDGTPWFL EINPLPTFKP 

       310        320        330 
DDTFAIVAEL MGRDYVDYLA EVFGRGLRRL GLS 

« Hide

References

« Hide 'large scale' references
[1]"Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
ISME J. -:0-0(2010)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: M8.
[2]"Genome sequence of Salinibacter ruber M8."
Genoscope
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M8.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP565814 Genomic DNA. Translation: CBH24234.1.
RefSeqYP_003571186.1. NC_014032.1.

3D structure databases

ProteinModelPortalD5H879.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH24234; CBH24234; SRM_01313.
GeneID8994522.
KEGGsrm:SRM_01313.
PATRIC35490448. VBISalRub49863_1223.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000011592.
KOK01921.
PhylomeDBD5H879.

Enzyme and pathway databases

BioCycSRUB761659:GHC6-1328-MONOMER.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5H879_SALRM
AccessionPrimary (citable) accession number: D5H879
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 16, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)