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D5H7Z9 (D5H7Z9_SALRM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufA EMBL CBH24154.1
Synonyms:tuf HAMAP-Rule MF_00118
Ordered Locus Names:SRM_01233 EMBL CBH24154.1
OrganismSalinibacter ruber (strain M8) [Complete proteome] [HAMAP] EMBL CBH24154.1
Taxonomic identifier761659 [NCBI]
Taxonomic lineageBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding82 – 865GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding137 – 1404GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D5H7Z9 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 64D19E50888E7698

FASTA39643,729
        10         20         30         40         50         60 
MAKEEFAREK PHVNVGTIGH VDHGKTTLTA AITKVLAERV GGAAEQTFEA IDNAPEERER 

        70         80         90        100        110        120 
GITIATSHVE YETENRHYAH VDCPGHADYV KNMVTGAAQM DGAILVVGSD DGPMPQTREH 

       130        140        150        160        170        180 
ILLARQVGVP YLVVFMNKTD LVDDAELLEL VEMEVRELLT EYEFPGDEVP VVRGSALQAL 

       190        200        210        220        230        240 
ESSEEHEEKI MELMEAVDEY IPTPERDVEK PFLMPVEDIF SITGRGTVVT GRIERGRVQL 

       250        260        270        280        290        300 
QDEIEIVGMQ EEKMDSVVTG IEMFNKTLEE GEAGDNAGIL LRGIEKEEVK RGMVLAEPGT 

       310        320        330        340        350        360 
VTPHKEFECE VYVLSKEEGG RHTPFFDGYQ PQFYFRTTDV TGSIELPEGV EMVMPGDNAT 

       370        380        390 
FEGSLIEPVA LEEGLRFAIR EGGHTVGAGV VTDILD 

« Hide

References

« Hide 'large scale' references
[1]"Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
ISME J. -:0-0(2010)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: M8.
[2]"Genome sequence of Salinibacter ruber M8."
Genoscope
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M8.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP565814 Genomic DNA. Translation: CBH24154.1.
RefSeqYP_003571106.1. NC_014032.1.

3D structure databases

ProteinModelPortalD5H7Z9.
SMRD5H7Z9. Positions 2-396.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDED5H7Z9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH24154; CBH24154; SRM_01233.
GeneID8995912.
KEGGsrm:SRM_01233.
PATRIC35490286. VBISalRub49863_1145.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
PhylomeDBD5H7Z9.

Enzyme and pathway databases

BioCycSRUB761659:GHC6-1246-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5H7Z9_SALRM
AccessionPrimary (citable) accession number: D5H7Z9
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 16, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)