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D5H7Z9

- D5H7Z9_SALRM

UniProt

D5H7Z9 - D5H7Z9_SALRM

Protein

Elongation factor Tu

Gene

tufA

Organism
Salinibacter ruber (strain M8)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi19 – 268GTPUniRule annotation
    Nucleotide bindingi82 – 865GTPUniRule annotation
    Nucleotide bindingi137 – 1404GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-HAMAP
    3. translation elongation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Elongation factorUniRule annotationImported

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciSRUB761659:GHC6-1246-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Short name:
    EF-TuUniRule annotation
    Gene namesi
    Name:tufAImported
    Synonyms:tufUniRule annotation
    Ordered Locus Names:SRM_01233Imported
    OrganismiSalinibacter ruber (strain M8)Imported
    Taxonomic identifieri761659 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
    ProteomesiUP000000933: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    PTM / Processingi

    Proteomic databases

    PRIDEiD5H7Z9.

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD5H7Z9.
    SMRiD5H7Z9. Positions 2-396.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily.UniRule annotation
    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000229290.
    KOiK02358.
    PhylomeDBiD5H7Z9.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5H7Z9-1 [UniParc]FASTAAdd to Basket

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    MAKEEFAREK PHVNVGTIGH VDHGKTTLTA AITKVLAERV GGAAEQTFEA    50
    IDNAPEERER GITIATSHVE YETENRHYAH VDCPGHADYV KNMVTGAAQM 100
    DGAILVVGSD DGPMPQTREH ILLARQVGVP YLVVFMNKTD LVDDAELLEL 150
    VEMEVRELLT EYEFPGDEVP VVRGSALQAL ESSEEHEEKI MELMEAVDEY 200
    IPTPERDVEK PFLMPVEDIF SITGRGTVVT GRIERGRVQL QDEIEIVGMQ 250
    EEKMDSVVTG IEMFNKTLEE GEAGDNAGIL LRGIEKEEVK RGMVLAEPGT 300
    VTPHKEFECE VYVLSKEEGG RHTPFFDGYQ PQFYFRTTDV TGSIELPEGV 350
    EMVMPGDNAT FEGSLIEPVA LEEGLRFAIR EGGHTVGAGV VTDILD 396
    Length:396
    Mass (Da):43,729
    Last modified:June 15, 2010 - v1
    Checksum:i64D19E50888E7698
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565814 Genomic DNA. Translation: CBH24154.1.
    RefSeqiWP_011403793.1. NC_014032.1.
    YP_003571106.1. NC_014032.1.

    Genome annotation databases

    EnsemblBacteriaiCBH24154; CBH24154; SRM_01233.
    GeneIDi8995912.
    KEGGisrm:SRM_01233.
    PATRICi35490286. VBISalRub49863_1145.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP565814 Genomic DNA. Translation: CBH24154.1 .
    RefSeqi WP_011403793.1. NC_014032.1.
    YP_003571106.1. NC_014032.1.

    3D structure databases

    ProteinModelPortali D5H7Z9.
    SMRi D5H7Z9. Positions 2-396.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi D5H7Z9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBH24154 ; CBH24154 ; SRM_01233 .
    GeneIDi 8995912.
    KEGGi srm:SRM_01233.
    PATRICi 35490286. VBISalRub49863_1145.

    Phylogenomic databases

    HOGENOMi HOG000229290.
    KOi K02358.
    PhylomeDBi D5H7Z9.

    Enzyme and pathway databases

    BioCyci SRUB761659:GHC6-1246-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
      Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
      ISME J. -:0-0(2010)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: M8.
    2. "Genome sequence of Salinibacter ruber M8."
      Genoscope
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: M8Imported.

    Entry informationi

    Entry nameiD5H7Z9_SALRM
    AccessioniPrimary (citable) accession number: D5H7Z9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3